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MU_Boleae_v2

Organism name:
Bactrocera oleae (olive fruit fly)
Isolate:
Demokritus
Sex:
pooled male and female
BioSample:
SAMN03840585
BioProject:
PRJNA288990
Submitter:
McGill University
Date:
2019/04/30
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_001188975.4 (latest)
RefSeq assembly accession:
GCF_001188975.3 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
LGAM02
Assembly method:
10x Genomics Supernova v. 1.2; Sspace standard v. 3.0; Pbjelly v. 15.8.24; NPSCARF v. 1.7-05b
Expected final version:
no
Genome coverage:
100.0x
Sequencing technology:
Illumina HiSeq; PacBio RSII; Oxford Nanopore MiniION

IDs: 6099371 [UID] 17357278 [GenBank] 22087388 [RefSeq]

See Genome Information for Bactrocera oleae

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

A number of contigs have been removed because they may contain contamination.

Global statistics

Total sequence length484,947,347
Total ungapped length458,449,056
Gaps between scaffolds0
Number of scaffolds38,161
Scaffold N504,570,889
Scaffold L5031
Number of contigs48,618
Contig N50187,710
Contig L50603
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)38,161

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced484,931,53238,160458,433,2414,570,88910,4570
MoleculeTotal
Length
Mitochondrion MT15,815