ABCC8
|
Familial hyperinsulinism
| AR | c.3989-9G>A | -- | 93% | 1/83 |
NM_000352.6
|
Zlotogora et al [2018]
|
ACADS
|
Short chain acyl-CoA dehydrogenase deficiency
| AR | c.319C>T | p.Arg107Cys | 70% | 1/15 to 1/26 |
NM_000017.4
NP_000008.1
| Tein et al [2008], Zlotogora et al [2018] |
ACSF3
| Combined malonic & methylmalonic aciduria (OMIM 614265) | AR | c.1411C>T | p.Arg471Trp | ~100% 3 | 1/69 |
NM_174917.5
NP_777577.2
|
Zlotogora et al [2018]
|
ADAMTS2
| Ehlers-Danlos syndrome, dermatosparaxis type (OMIM 225410) | AR | c.673C>T | p.Gln225Ter | 95% | 1/159 to 1/187 |
NM_014244.5
NP_055059.2
| Shi et al [2017], Zlotogora et al [2018] |
APC
| Colorectal cancer (See APC-Associated Polyposis Conditions.) | AD | c.3920T>A | p.Ile1307Lys | 92% | NA |
NM_000038.6
NP_000029.2
|
Ukaegbu et al [2021]
|
ASPA
|
Canavan disease
| AR | c.854A>C | p.Glu285Ala | 83% | 1/55 |
NM_000049.4
NP_000040.1
| Kaul et al [1994], Lazarin et al [2013], Zlotogora et al [2018] |
c.693C>A | p.Tyr231Ter | 15% |
ATP7B
|
Wilson disease
| AR | c.3191A>C | p.Glu1064Ala | 85% | 1/67 |
NM_000053.4
NP_000044.2
|
Shi et al [2017]
|
c.3207C>A | p.His1069Gln |
c.1934T>G | p.Met645Arg |
BBS2
|
Bardet-Biedl syndrome
| AR | c.311A>C | p.Asp104Ala | 25% | 1/139 |
NM_031885.5
NP_114091.4
| Shi et al [2017], Zlotogora et al [2018] |
c.1895G>C | p.Arg632Pro | 75% |
BCKDHB
|
Maple syrup urine disease
| AR | c.548G>C | p.Arg183Pro | 81% | 1/97 |
NM_183050.4
NP_898871.1
|
Zlotogora et al [2018]
|
c.832G>A | p.Gly278Ser | 19% |
BLM
|
Bloom syndrome
| AR | c.2207_2212delATCTGAinsTAGATTC | p.Tyr736LeufsTer5 | 98%-99% | 1/104 to 1/134 |
NM_000057.4
NP_000048.1
| German et al [2007], Scott et al [2010], Lazarin et al [2013], Zlotogora et al [2018] |
BRCA1
|
BRCA1- and BRCA2-associated hereditary breast and ovarian cancer
| AD | c.68_69delAG | p.Glu23ValfsTer17 | 72% | NA |
NM_007294.4
NP_009225.1
| Bahar et al [2001], Frank et al [2002], Phelan et al [2002], Ferla et al [2007], Cox et al [2018] |
c.5266dupC | p.Gln1756ProfsTer74 | 26% |
BRCA2
| c.5946delT | p.Ser1982ArgfsTer22 | 95% |
NM_000059.4
NP_000050.3
|
CCDC65
|
Primary ciliary dyskinesia
| AR | c.877_878delAT | p.Ile293ProfsTer2 | ~100% 3 | 1/118 to 1/344 |
NM_033124.5
NP_149115.2
| Austin-Tse et al [2013], Horani et al [2013] |
CCM2
|
Cerebral cavernous malformation
| AD | c.30+5_30+6delGCinsTT | -- | >70% | NA |
NM_031443.4
|
Gallione et al [2011]
|
CFTR
|
Cystic fibrosis
| AR | c.3846G>A | p.Trp1282Ter | 45%-50% | 1/55 |
NM_000492.4
NP_000483.3
| Scott et al [2010], Lazarin et al [2013], Zlotogora et al [2018] |
c.1521_1523delCTT | p.Phe508del | 27%-34% | 1/88 |
c.3454G>C | p.Asp1152His | 7%-14% | 1/175 |
CHEK2
| Hereditary breast and ovarian cancer (OMIM 114480) | AD | c.1283C>T | p.Ser428Phe | 67% | NA |
NM_007194.4
NP_009125.1
| Leedom et al [2016], Nielsen et al [2016], Walsh et al [2017], Cox et al [2018] |
c.1100delC | p.Thr367MetfsTer15 | 17% |
c.470T>C | p.Ile157Thr | 11% |
CHRNE
|
Congenital myasthenic syndrome
| AR | c.1353dupG | p.Asn452GlufsTer4 | 85% | 1/182 to 1/200 |
NM_000080.4
NP_000071.1
|
Zlotogora et al [2018]
|
CLRN1
| Usher syndrome type 3A (OMIM 276902) | AR | c.144T>G | p.Asn48Lys | ~100% 3 | 1/92 to 1/120 |
NM_174878.3
NP_777367.1
| Scott et al [2010], Zlotogora et al [2018] |
CNGA3
|
Achromatopsia
| AR | c.1669G>A | p.Gly557Arg | <100% 4 | 1/169 |
NM_001298.3
NP_001289.1
|
Zlotogora et al [2018]
|
COL4A3
|
Alport syndrome
| AR | c.40_63del24 | p.Leu14_Leu21del | 95% | 1/192 |
NM_000091.5
NP_000082.2
| Shi et al [2017], Zlotogora et al [2018] |
COQ4
| Mitochondrial encephalomyopathy (See Primary Coenzyme Q10 Deficiency.) | AR | c.718C>T | p.Arg240Cys | ~100% 3 | 1/149 to 1/161 |
NM_016035.5
NP_057119.3
|
Zlotogora et al [2018]
|
CPT2
|
Carnitine palmitoyltransferase II deficiency
| AR | c.338C>T | p.Ser113Leu | 40% | 1/51 |
NM_000098.3
NP_000089.1
| Shi et al [2017], Zlotogora et al [2018] |
c.1239_1240delGA | p.Lys414ThrfsTer7 | 25% |
c.1342T>C | p.Phe448Leu | 25% |
CRB2
| Ventriculomegaly w/cystic kidney disease (OMIM 219730) | AR | c.2400C>G | p.Asn800Lys | 68% | 1/66 |
NM_173689.7
NP_775960.4
|
Zlotogora et al [2018]
|
c.1928A>C | p.Glu643Ala | 32% |
DCXR
| Pentosuria (OMIM 260800) | AR | c.583delC | p.His195ThrfsTer7 | 80% | 1/29 |
NM_016286.4
NP_057370.1
|
DGAT1
| Protein-losing enteropathy (OMIM 615863) | AR | c.751+2T>C | -- | ~100% 3 | 1/90 |
NM_012079.6
|
DHCR7
|
Smith-Lemli-Opitz syndrome
| AR | c.964-1G>C | -- | 93% | 1/40 |
NM_001360.3
| Shi et al [2017], Zlotogora et al [2018] |
DHDDS
|
Retinitis pigmentosa, nonsyndromic
| AR | c.124A>G | p.Lys42Glu | <100% 4 | 1/90 to 1/118 |
NM_024887.4
NP_079163.2
| Zelinger et al [2011], Shi et al [2017], Zlotogora et al [2018] |
DLD
|
Dihydrolipoamide dehydrogenase deficiency
| AR | c.685G>T | p.Gly229Cys | 72% | 1/61 to 1/108 |
NM_000108.5
NP_000099.2
| Shaag et al [1999], Scott et al [2010], Zlotogora et al [2018] |
c.104dupA | p.Tyr35Ter | 28% |
DNAH5
|
Primary ciliary dyskinesia
| AR | c.7502G>C | p.Arg2501Pro | 86% | 1/143 to 1/172 |
NM_001369.3
NP_001360.1
| Fedick et al [2015], Baskovich et al [2016], Zlotogora et al [2018] |
DNAI2
| c.1304G>A | p.Trp435Ter | ~100% 3 | 1/145 to 1/200 |
NM_023036.6
NP_075462.3
| Knowles et al [2013], Zlotogora et al [2018] |
ELP1
|
Familial dysautonomia
| AR | c.2204+6T>C | -- | >99% | 1/31 to 1/43 |
NM_003640.5
| Scott et al [2010], Lazarin et al [2013] |
EYS
|
Retinitis pigmentosa
| AR | c.9286_9295delGTAAATATCG | p.Val3096LeufsTer28 | <100% 4 | 1/189 |
NM_001142800.2
NP_001136272.1
|
Zlotogora et al [2018]
|
F11
| Factor XI deficiency (OMIM 612416) | AD AR | c.403G>T | p.Glu135Ter | 42% | 1/12 |
NM_000128.4
NP_000119.1
|
c.901T>C | p.Phe301Leu | 57% |
FAH
|
Tyrosinemia type 1
| AR | c.782C>T | p.Pro261Leu | >99% | 1/132 to 1/143 |
NM_000137.4
NP_000128.1
| Elpeleg et al [2002], Shi et al [2017], Zlotogora et al [2018] |
c.1062+5G>A | -- |
NM_000137.4
|
FANCC
|
Fanconi anemia
| AR | c.456+4A>T | -- | >99% | 1/83 to 1/100 |
NM_000136.3
| Scott et al [2010], Lazarin et al [2013], Zlotogora et al [2018] |
FKTN
|
Fukuyama congenital muscular dystrophy
| AR | c.1167dupA | p.Phe390IlefsTer14 | ~100% 3 | 1/63 to 1/90 |
NM_001079802.2
NP_001073270.1
|
Zlotogora et al [2018]
|
G6PC
|
Glycogen storage disease type 1A
| AR | c.247C>T | p.Arg83Cys | ~100% 3 | 1/64 to 1/75 |
NM_000151.4
NP_000142.2
| Scott et al [2010], Zlotogora et al [2018] |
GALT
|
Galactosemia
| AR | c.-1039_+789del5573ins129 5 (5458-bp del; whole-gene del) | -- | 80% | 1/160 |
NG_009029.2
| Coffee et al [2006], Shi et al [2017] |
c.563A>G | p.Gln188Arg | <10% |
NM_000155.4
NP_000146.2
|
c.855G>T | p.Lys285Asn | <10% |
GBA1 (GBA) |
Gaucher disease
| AR | c.1226A>G | p.Asn409Ser | 88% | 1/15 |
NM_001005741.3
NP_001005741.1
| Scott et al [2010], Lazarin et al [2013], Zlotogora et al [2018] |
GBE1
|
Glycogen storage disease type IV
| AR | c.986A>C | p.Tyr329Ser | 95% | 1/68 |
NM_000158.4
NP_000149.4
| Hussain et al [2012], Zlotogora et al [2018] |
GJB2
|
GJB2-related autosomal recessive nonsyndromic hearing loss
| AR | c.167delT | p.Leu56ArgfsTer26 | 58% | 1/31 |
NM_004004.6
NP_003995.2
|
Zlotogora et al [2018]
|
c.109G>A | p.Val37Ile | 28% | 1/63 |
c.35delG | p.Gly12ValfsTer2 | 13% | 1/133 |
GMPPB
| Muscular dystrophy & epilepsy (See Congenital Myasthenic Syndromes Overview.) | AR | c.860G>A | p.Arg287Gln | <100% 4 | 1/112 |
NM_013334.4
NP_037466.3
|
GREM1
| Colorectal cancer (OMIM 601228) | AD | 40-kb dup incl GREM1 upstream region & SCG5 exons 2-5 5 | -- | ~100% 3 | NA |
NG_033791.1
|
Jaeger et al [2012]
|
HEXA
|
Tay-Sachs disease
| AR | c.1274_1277dupTATC | p.Tyr427IlefsTer5 | 80%-81% | 1/27 |
NM_000520.6
NP_000511.2
| Kaback et al [1993], Scott et al [2010], Lazarin et al [2013], Zlotogora et al [2018] |
c.1421+1G>C | -- | 9%-15% |
NM_000520.6
|
HIKESHI
| Leukodystrophy, early-onset spastic paraparesis, acquired microcephaly (OMIM 616881) | AR | c.160G>C | p.Val54Leu | ~100% 3 | 1/189 to 1/200 |
NM_016401.4
NP_057485.2
| Edvardson et al [2016], Zlotogora et al [2018] |
HOGA1
|
Primary hyperoxaluria type 3
| AR | c.944_946delAGG | p.Glu315del | 66% | Unknown |
NM_138413.4
NP_612422.2
| Belostotsky et al [2010], Zlotogora et al [2018] |
c.107C>T | p.Ala36Val | 22% |
IDH3A
| Retinitis pigmentosa & pseudocoloboma (OMIM 619007) | AR | c.938T>C | p.Met313Thr | ~100% 3 | 1/103 |
NM_005530.3
NP_005521.1
|
Zlotogora et al [2018]
|
KIFBP
| Goldberg-Shprintzen syndrome (OMIM 609460) | AR | c.1516dupA | p.Ile506AsnfsTer3 | ~100% 3 | 1/196 |
NM_015634.4
NP_056449.1
|
LCA5
|
Leber congenital amaurosis
| AR | c.835C>T | p.Gln279Ter | ~100% 3 | 1/100 to 1/222 |
NM_181714.4
NP_859065.2
|
LDLR
|
Familial hypercholesterolemia
| AD | c.655_657delGGC | p.Gly219del | 35%-100% | NA |
NM_000527.5
NP_000518.1
|
Durst et al [2001]
|
LOXHD1
| Nonsyndromic hearing loss (See Hereditary Hearing Loss and Deafness Overview.) | AR | c.4714C>T | p.Arg1572Ter | ~100% 3 | 1/167 to 1/180 |
NM_144612.7
NP_653213.6
| Edvardson et al [2011], Zlotogora et al [2018] |
MAK
|
Retinitis pigmentosa, nonsyndromic
| AR | c.1297_1298ins353 5 (c.1297ins(Alu)) | -- | 99% | 1/90 |
NG_030040.1
|
Kimchi et al [2018]
|
MCOLN1
|
Mucolipidosis IV
| AR | c.406-2A>G | -- | 78% | 1/89 to 1/133 |
NM_020533.3
| Bach et al [2005], Scott et al [2010], Lazarin et al [2013] |
c.-1015_789del6434 5 (g.511_6943del; exon 1-7 del) | -- | 22% |
MECR
|
MECR-related neurologic disorder
| AR | c.830+2_830+3insT | p.Glu303del | 69% | 1/97 |
NM_016011.4
NP_057095.4
|
Zlotogora et al [2018]
|
c.695G>A | p.Gly232Glu | 31% |
MEFV
|
Familial Mediterranean fever
| AR | c.442G>C | p.Glu148Gln | 47%-59% | 1/5 |
NM_000243.3
NP_000234.1
| Aksentijevich et al [1999], Zlotogora et al [2018] |
c.1105C>T | p.Pro369Ser | 20% |
c.2177T>C | p.Val726Ala | 18%-41% |
c.2084A>G | p.Lys695Arg | 12% |
MPL
| Congenital amegakaryocytic thrombocytopenia (OMIM 604498) | AR | c.79+2T>A | -- | 95% | 1/57 to 1/62 |
NM_005373.3
| Shi et al [2017], Zlotogora et al [2018] |
MSH2
|
Lynch syndrome
| AD | c.1906G>C | p.Ala636Pro | 74% | NA |
NM_000251.3
NP_000242.1
|
Goldberg et al [2014]
|
MSH6
| c.3984_3987dupGTCA | p.Leu1330ValfsTer12 | 66% |
NM_000179.3
NP_000170.1
|
c.3959_3962delCAAG | p.Ala1320GlufsTer6 | 33% |
MTTP
|
Abetalipoproteinemia
| AR | c.2593G>T | p.Gly865Ter | 95% | 1/131 to 1/185 |
NM_000253.4
NP_000244.2
| Benayoun et al [2007], Shi et al [2017], Zlotogora et al [2018] |
c.2212delT | p.Ser738fs |
NEB
| Nemaline myopathy 2 (OMIM 256030) | AR | c.7431+1919_7536+374del2502 5 (2.5-kb del of exon 55) | p.Arg2478_Asp2512del | >95% | 1/168 |
NM_001271208.2
NP_001258137.2
| Scott et al [2010], Zlotogora et al [2018] |
c.9619-2A>G | -- |
NM_001271208.2
|
NR2E3
| Enhanced S-cone syndrome (OMIM 268100) | AR | c.932G>A | p.Arg311Gln | ~80% | Unknown |
NM_014249.4
NP_055064.1
|
Zlotogora et al [2018]
|
OTOF
|
Deafness
| AR | c.5332G>T | p.Val1778Phe | ~100% 3 | 1/78 to 1/106 |
NM_194248.3
NP_919224.1
|
OPTN
|
Amyotrophic lateral sclerosis
| AD
AR | c.381_382insAG | p.Asp128ArgfsTer22 | ~100% 3 | 1/100 |
NM_021980.4
NP_068815.2
| Goldstein et al [2016], Zlotogora et al [2018] |
PAH
|
Phenylalanine hydroxylase deficiency
| AR | c.898G>T | p.Ala300Ser | 24% | 1/18 |
NM_000277.3
NP_000268.1
|
Zlotogora et al [2018]
|
c.506G>A | p.Arg169His | 24% |
c.1208C>T | p.Ala403Val | 18% |
PCDH15
|
Usher syndrome type 1
| AR | c.733C>T | p.Arg245Ter | 66% | 1/147 |
NM_033056.4
NP_149045.3
| Scott et al [2010], Zlotogora et al [2018] |
c.5557A>C | p.Met1855Leu | 34% |
PEX2
|
Zellweger spectrum disorder
| AR | c.355C>T | p.Arg119Ter | ~100% 3 | 1/196 to 1/227 |
NM_000318.3
NP_000309.2
|
Zlotogora et al [2018]
|
PKHD1
|
Polycystic kidney disease, autosomal recessive
| AR | c.3761_3762delCCinsG | p.Ala1254GlyfsTer49 | 90% | 1/105 |
NM_138694.4
NP_619639.3
|
Shi et al [2017]
|
c.107C>T | p.Thr36Met |
PMM2
|
PMM2-CDG
| AR | c.422G>A | p.Arg141His | 90% | 1/61 |
NM_000303.3
NP_000294.1
|
RTEL1
|
Dyskeratosis congenita
| AR | c.3791G>A 6 | p.Arg1264His | 78% | 1/165 |
NM_001283009.2
NP_001269938.1
|
Zlotogora et al [2018]
|
RTEL1
| c.1548G>T | p.Met516Ile | 22% |
NM_032957.5
NP_116575.3
|
SACS
|
ARSACS
| AR | c.7140T>A | p.Asn2380Lys | <100% 4 | 1/141 |
NM_014363.6
NP_055178.3
|
SAMHD1
|
Aicardi-Goutières syndrome
| AR | 8984-bp del of exon 1 5 | -- | 75% | 1/138 |
NG_017059.1
| Crow et al [2015], Straussberg et al [2015] |
SLC1A4
| Spastic tetraplegia, thin corpus callosum, & progressive microcephaly (OMIM 616657) | AR | c.766G>A | p.Glu256Lys | ~100% 3 | 1/108 |
NM_003038.5
NP_003029.2
|
Zlotogora et al [2018]
|
SLC3A1
| Cystinuria (OMIM 220100) | AR | c.808C>T | p.Arg270Ter | ~100% 3 | 1/61 |
NM_000341.4
NP_000332.2
|
SLC26A4
|
Pendred syndrome
| AR | c.349C>T | p.Leu117Phe | ~100% 3 | 1/98 |
NM_000441.2
NP_000432.1
|
SLC38A8
| Foveal hypoplasia (OMIM 609218) | AR | c.848A>C | p.Asp283Ala | ~100% 3 | 1/81 |
NM_001080442.3
NP_001073911.1
|
SMARCAL1
|
Schimke immunoosseous dysplasia
| AR | c.863-2A>G | -- | ~100% 3 | 1/189 |
NM_014140.4
|
SMPD1
|
Acid sphingomyelinase deficiency
| AR | c.1493G>T | p.Arg498Leu | 54%-55% | 1/95 to 1/116 |
NM_000543.5
NP_000534.3
| Scott et al [2010], Lazarin et al [2013], Zlotogora et al [2018] |
c.996delC | p.Phe333SerfsTer52 | 29% |
SPATA16
| Spermatogenic failure (OMIM 102530) | AR | c.848G>A | p.Arg283Gly | ~100% 3 | 1/196 |
NM_031955.6
NP_114161.3
|
Zlotogora et al [2018]
|
STRC
|
Deafness
| AR | c.4171C>G | p.Arg1391Gly | ~100% 3 | 1/200 |
NM_153700.2
NP_714544.1
|
TECPR2
|
Hereditary sensory & autonomic neuropathy w/intellectual disability
| AR | c.1319delT | p.Leu440ArgfsTer19 | <100% 4 | 1/154 |
NM_014844.5
NP_055659.2
| Zlotogora et al [2018], Neuser et al [2021] |
THG1L
| Spinocerebellar ataxia type 28 (OMIM 618800) | AR | c.164T>C | p.Val55Ala | ~100% 3 | 1/110 to 1/130 |
NM_017872.5
NP_060342.2
|
Zlotogora et al [2018]
|
TKT
| Short stature, developmental delay, & congenital heart defects (OMIM 606781) | AR | c.769_770insCTACCTCCTTATCTT | p.Trp257delinsSerThrSerLeuSerSerGly | ~100% 3 | 1/169 to 1/625 |
NM_001135055.3
NP_001128527.1
|
TMEM216
|
Joubert syndrome
| AR | c.218G>T | p.Arg73Leu | ~100% 3 | 1/92 to 1/143 |
NM_001173990.3
NP_001167461.1
| Edvardson et al [2010], Valente et al [2010], Zlotogora et al [2018] |
TSPEAR
| Ectodermal dysplasia (OMIM 618180) | AR | c.1915G>A | p.Asp639Asn | 98% | 1/93 |
NM_144991.3
NP_659428.2
|
Zlotogora et al [2018]
|
VPS11
| Hypomyelination & developmental delay (OMIM 616683) | AR | c. 2536T>G | p.Cys846Gly | ~100% 3 | 1/159 to 1/204 |
NM_021729.6
NP_068375.3
|