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Items: 1 to 20 of 79

1.

Comparative transcriptional analysis reveals gene expression changes in spore germination of opportunistic pathogenic fungi

(Submitter supplied) In opportunistic human pathogenic fungi, changes in gene expression play a crucial role in the evolution of growth stages from early spore germination through host infection. Comparative transcriptomics from diverse fungal pathogens along closely related non-pathogenic model provided insights of regulatory mechanisms behind the initiation of infectious processes by different fungi. We examined the gene expression patterns of 3,845 single-copy orthologous genes (SCOGs) across five phylogenetically distinct species, including the opportunistic human pathogens Fusarium oxysporum, Aspergillus fumigatus, and A. more...
Organism:
Aspergillus nidulans; Fusarium oxysporum; Aspergillus fumigatus
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL35000 GPL32392 GPL33056
45 Samples
Download data: TXT
Series
Accession:
GSE279549
ID:
200279549
2.

A pair of effectors in a conditionally dispensable chromosome of Fusarium oxysporum suppresses host-specific immunity

(Submitter supplied) In plant pathogenic fungi, conditionally dispensable (CD) chromosomes are often associated with virulence, but not viability. Such virulence-associated CD chromosomes carry genes encoding effectors and/or host-specific toxin biosynthesis enzymes, potentially important for determining host specificity. Fusarium oxysporum causes devastating diseases of more than 100 plant species. In particular, F. oxysporum f. more...
Organism:
Fusarium oxysporum; Brassica oleracea; Arabidopsis thaliana
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL29144 GPL19580 GPL29143
25 Samples
Download data: TXT
Series
Accession:
GSE157823
ID:
200157823
3.

mRNA-profiles of Arabidopsis thaliana (Col-0) roots infected with Fusarium oxysporum 5176 over a time course of six days

(Submitter supplied) Background: Cell walls (CWs) are protein-rich polysaccharide matrices essential for plant growth and environmental acclimationadaptation. The CW constitutes the first physical barrier as well as a primary source of sugars for plant microbes, such as the  vascular pathogen Fusarium oxysporum (Fo). Fo colonizes roots, advancing through the plant primary CWs towards the vasculature, where it grows causing devastation in many crops. more...
Organism:
Arabidopsis thaliana; Fusarium oxysporum
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL24159 GPL17639
52 Samples
Download data: TXT, XLSX
Series
Accession:
GSE168015
ID:
200168015
4.

Transcriptomic profilling of Arabidopsis thaliana roots infected by Fusarium oxysporum

(Submitter supplied) Using next-generation sequencing, we sequenced transcriptomes of A. thaliana plants infected by the pathogenic and the symbiotic fungus and analyzed plant and fungal gene expression changes between pathogenic and symbiotic interactions. Infected plants were sampled at early infection stages, 12, 24, 48 and 96 HPI (hours post inoculation)
Organism:
Arabidopsis thaliana; Fusarium oxysporum
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL22481 GPL13222
29 Samples
Download data: TXT
Series
Accession:
GSE87352
ID:
200087352
5.

RNA-seq data of nox1 gene when T. guizhouense vs F. oxysporum

(Submitter supplied) nox1 gene has effect on the production of H2O2 of T. guizhouense NJAU4742. In this experiment, WT, knockout mutant and overexpression mutant of nox1 gene for NJAU4742 were used to do confrantation with F. oxysporum FOC4 strain, and then the mycelum from NJAU4742 and FOC4 (before contact and after contact) were collected and used to detect the gene expression patterns in this progress by RNA-seq.
Organism:
Trichoderma guizhouense; Fusarium oxysporum
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL22481 GPL25399 GPL25398
27 Samples
Download data: XLSX
Series
Accession:
GSE117839
ID:
200117839
6.

Comparsion of histone modifications of core and accessory chromosomes of Fusarium oxysporum

(Submitter supplied) To study whether there are differences in chromatin-mediated regulation between and within chromosomes in Fusarium oxysporum f. sp. lycopersici 4287 (FGSC9935), we determined the distribution of histone marks associated with euchromatin (H3K4me2) and facultative heterochromatin (H3K27me3) in vitro. We then determined whether these differences correlate with differences in dispensability and sequence divergence and gene expression.
Organism:
Fusarium oxysporum
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL24159
4 Samples
Download data: BED
Series
Accession:
GSE121283
ID:
200121283
7.

Transcriptome analysis reveal the mechanism of Fungicidal of Thymol against Fusarium oxysporum f.sp. niveum

(Submitter supplied) Thymol (5-methyl-2-(1-methylethyl) phenol, PubChem CID: 6989) has been extensively reported to have antimicrobial activity against pathogenic microorganisms. In this study, the growth of F. oxysporum was significantly inhibited by thymol in vitro. The dry weight of F. oxysporum was decreased significantly. Thymol-induced cell membrane damage was observed at 24 hpi (hours post incubation). Therefore, the changes in the gene expression level of F. more...
Organism:
Fusarium oxysporum
Type:
Expression profiling by high throughput sequencing
Platform:
GPL24159
6 Samples
Download data: TXT
Series
Accession:
GSE105423
ID:
200105423
8.

Expression profiles of nine Fusarium fujikuroi strains revealed common and different sets of up-regulated genes

(Submitter supplied) We provide genome sequences of altogether 9 F. fujikuroi and one F. oxysporum (outgroup) strains, all isolated from rice plants in different geographical regions of the world, and searched for differences in genome structure, chromosome size, secondary metabolite production, virulence on rice, and in vitro and in planta transcriptome profiles. Despite their high relatedness on genome level, they differ significantly in their ability to infect rice, to form asexual spores (micro-and macroconidia), and to produce secondary metabolites. more...
Organism:
Fusarium oxysporum; Fusarium fujikuroi
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL22481 GPL22633
30 Samples
Download data: TXT
Series
Accession:
GSE89480
ID:
200089480
9.

New insights into antifungal resistance mechanisms in Fusarium species revealed by high throughput sequencing

(Submitter supplied) Fusarium spp. are fungal pathogens of humans and plants. Fusarium oxysporum and Fusarium solani are important species isolated from infections such as onychomycosis, fungal keratitis, invasive infections, and disseminated diseases. These pathologies have a very difficult therapeutic management and poor therapeutic responses, especially in patients with disseminated infection. Little information is available regarding the molecular mechanisms responsible for antifungal resistance in these fungi. more...
Organism:
Fusarium solani; Fusarium oxysporum
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL21966 GPL21965
6 Samples
Download data: TSV
Series
Accession:
GSE82060
ID:
200082060
10.

FO_OEFoabaA_STAGE4_R3

Organism:
Fusarium oxysporum
Source name:
Germinated conidia
Platform:
GPL35000
Series:
GSE279549
Download data: TXT
Sample
Accession:
GSM8575009
ID:
308575009
11.

FO_OEFoabaA_STAGE4_R2

Organism:
Fusarium oxysporum
Source name:
Germinated conidia
Platform:
GPL35000
Series:
GSE279549
Download data: TXT
Sample
Accession:
GSM8575008
ID:
308575008
12.

FO_OEFoabaA_STAGE4_R1

Organism:
Fusarium oxysporum
Source name:
Germinated conidia
Platform:
GPL35000
Series:
GSE279549
Download data: TXT
Sample
Accession:
GSM8575007
ID:
308575007
13.

FO_OEAfabaA_STAGE4_R3

Organism:
Fusarium oxysporum
Source name:
Germinated conidia
Platform:
GPL35000
Series:
GSE279549
Download data: TXT
Sample
Accession:
GSM8575006
ID:
308575006
14.

FO_OEAfabaA_STAGE4_R2

Organism:
Fusarium oxysporum
Source name:
Germinated conidia
Platform:
GPL35000
Series:
GSE279549
Download data: TXT
Sample
Accession:
GSM8575005
ID:
308575005
15.

FO_OEAfabaA_STAGE4_R1

Organism:
Fusarium oxysporum
Source name:
Germinated conidia
Platform:
GPL35000
Series:
GSE279549
Download data: TXT
Sample
Accession:
GSM8575004
ID:
308575004
16.

FO_WT_STAGE4_R3

Organism:
Fusarium oxysporum
Source name:
Germinated conidia
Platform:
GPL35000
Series:
GSE279549
Download data: TXT
Sample
Accession:
GSM8575003
ID:
308575003
17.

FO_WT_STAGE4_R2

Organism:
Fusarium oxysporum
Source name:
Germinated conidia
Platform:
GPL35000
Series:
GSE279549
Download data: TXT
Sample
Accession:
GSM8575002
ID:
308575002
18.

FO_WT_STAGE4_R1

Organism:
Fusarium oxysporum
Source name:
Germinated conidia
Platform:
GPL35000
Series:
GSE279549
Download data: TXT
Sample
Accession:
GSM8575001
ID:
308575001
19.

FO_STAGE4_R3

Organism:
Fusarium oxysporum
Source name:
Germinated conidia
Platform:
GPL35000
Series:
GSE279549
Download data: TXT
Sample
Accession:
GSM8574976
ID:
308574976
20.

FO_STAGE4_R2

Organism:
Fusarium oxysporum
Source name:
Germinated conidia
Platform:
GPL35000
Series:
GSE279549
Download data: TXT
Sample
Accession:
GSM8574975
ID:
308574975

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