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Items: 1 to 20 of 21

1.

Transcriptomic RNA-sequencing analysis of the hypervirulent Clostridioides difficile R20291 strain in response to trehalose

(Submitter supplied) Clostridioides difficile, the leading cause of antibiotic-associated diarrhoea worldwide, is a genetically diverse species which can metabolise a number of nutrient sources upon colonising a dysbiotic gut environment. Trehalose, a disaccharide sugar consisting of two glucose molecules bonded by an α 1,1-glycosidic bond, has been hypothesised to be involved in the emergence of C. difficile hypervirulence due to its increased utilisation by the RT027 and RT078 strains. more...
Organism:
Clostridioides difficile R20291
Type:
Expression profiling by high throughput sequencing
Platform:
GPL33395
6 Samples
Download data: XLSX
Series
Accession:
GSE232033
ID:
200232033

PubMed Full text in PMC Similar studies

2.

Differentially expressed genes in rough and smooth colony isolates of Clostridioides difficile

(Submitter supplied) Purpose: to determine the differentially expressed genes in the phase-variable rough and smooth colony isolates of C. difficile Methods: C. difficile R20291 was grown on BHIS agar to obtain distinct colonies. Individual rough and smooth colonies were chosen for propagation on BHIS-agar for 24 hours as described in Garrett, et al., PLoS Biology, 2019. Growth was collected from n = 2 biological replicates. more...
Organism:
Clostridioides difficile R20291
Type:
Expression profiling by high throughput sequencing
Platform:
GPL24374
4 Samples
Download data: TXT, XLSX
Series
Accession:
GSE158225
ID:
200158225

SRA Run Selector

3.

Tre3

Organism:
Clostridioides difficile R20291
Source name:
R20296
Platform:
GPL33395
Series:
GSE232033
Download data
Sample
Accession:
GSM7310631
ID:
307310631

SRA Run Selector

4.

Tre2

Organism:
Clostridioides difficile R20291
Source name:
R20295
Platform:
GPL33395
Series:
GSE232033
Download data
Sample
Accession:
GSM7310630
ID:
307310630

SRA Run Selector

5.

Tre1

Organism:
Clostridioides difficile R20291
Source name:
R20294
Platform:
GPL33395
Series:
GSE232033
Download data
Sample
Accession:
GSM7310629
ID:
307310629

SRA Run Selector

6.

Glu3

Organism:
Clostridioides difficile R20291
Source name:
R20293
Platform:
GPL33395
Series:
GSE232033
Download data
Sample
Accession:
GSM7310628
ID:
307310628

SRA Run Selector

7.

Glu2

Organism:
Clostridioides difficile R20291
Source name:
R20292
Platform:
GPL33395
Series:
GSE232033
Download data
Sample
Accession:
GSM7310627
ID:
307310627

SRA Run Selector

8.

Glu1

Organism:
Clostridioides difficile R20291
Source name:
R20291
Platform:
GPL33395
Series:
GSE232033
Download data
Sample
Accession:
GSM7310626
ID:
307310626

SRA Run Selector

9.

C. difficile R20291 smooth-rep 2

Organism:
Clostridioides difficile R20291
Source name:
C. difficile R20291
Platform:
GPL24374
Series:
GSE158225
Download data: TXT
Sample
Accession:
GSM4795553
ID:
304795553

SRA Run Selector

10.

C. difficile R20291 smooth-rep 1

Organism:
Clostridioides difficile R20291
Source name:
C. difficile R20291
Platform:
GPL24374
Series:
GSE158225
Download data: TXT
Sample
Accession:
GSM4795552
ID:
304795552

SRA Run Selector

11.

C. difficile R20291 rough-rep 2

Organism:
Clostridioides difficile R20291
Source name:
C. difficile R20291
Platform:
GPL24374
Series:
GSE158225
Download data: TXT
Sample
Accession:
GSM4795551
ID:
304795551

SRA Run Selector

12.

C. difficile R20291 rough-rep 1

Organism:
Clostridioides difficile R20291
Source name:
C. difficile R20291
Platform:
GPL24374
Series:
GSE158225
Download data: TXT
Sample
Accession:
GSM4795550
ID:
304795550

SRA Run Selector

13.

C_difficile_Plate_3

Organism:
Clostridioides difficile R20291
Source name:
Clostridium difficile cells
Platform:
GPL20211
Series:
GSE69001
Download data
Sample
Accession:
GSM1689912
ID:
301689912

SRA Run Selector

14.

C_difficile_Plate_2

Organism:
Clostridioides difficile R20291
Source name:
Clostridium difficile cells
Platform:
GPL20211
Series:
GSE69001
Download data
Sample
Accession:
GSM1689911
ID:
301689911

SRA Run Selector

15.

C_difficile_Plate_1

Organism:
Clostridioides difficile R20291
Source name:
Clostridium difficile cells
Platform:
GPL20211
Series:
GSE69001
Download data
Sample
Accession:
GSM1689910
ID:
301689910

SRA Run Selector

16.

C_difficile_Planktonic_3

Organism:
Clostridioides difficile R20291
Source name:
Clostridium difficile cells
Platform:
GPL20211
Series:
GSE69001
Download data
Sample
Accession:
GSM1689909
ID:
301689909

SRA Run Selector

17.

C_difficile_Planktonic_2

Organism:
Clostridioides difficile R20291
Source name:
Clostridium difficile cells
Platform:
GPL20211
Series:
GSE69001
Download data
Sample
Accession:
GSM1689908
ID:
301689908

SRA Run Selector

18.

C_difficile_Planktonic_1

Organism:
Clostridioides difficile R20291
Source name:
Clostridium difficile cells
Platform:
GPL20211
Series:
GSE69001
Download data
Sample
Accession:
GSM1689907
ID:
301689907

SRA Run Selector

19.

C_difficile_Biofilm_3

Organism:
Clostridioides difficile R20291
Source name:
Clostridium difficile cells
Platform:
GPL20211
Series:
GSE69001
Download data
Sample
Accession:
GSM1689906
ID:
301689906

SRA Run Selector

20.

C_difficile_Biofilm_2

Organism:
Clostridioides difficile R20291
Source name:
Clostridium difficile cells
Platform:
GPL20211
Series:
GSE69001
Download data
Sample
Accession:
GSM1689905
ID:
301689905

SRA Run Selector

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