GEO DataSets

(Submitter supplied) mRNA sequencing in bacteria is challenging due to the abundance of ribosomal rRNA that cannot be easily removed prior to sequencing. While commercially available kits target specific rRNA sequences found in defined lists of common bacterial species, they are frequently inefficient when applied to other divergent species, including those from environmental isolates. Similar to the commercial kits, other common techniques for rRNA depletion typically employ large probe sets that tile full-length rRNA sequences; however, such approaches are both time consuming and expensive when applied to multiple species or complex consortia of non-model microbes. more...

Organism:

Escherichia coli; Fibrobacter succinogenes; Geobacter metallireducens; Anaeromyces robustus; Caecomyces churrovis

Type:

Expression profiling by high throughput sequencing

10 related Platforms

65 Samples

Download data: TXT

(Submitter supplied) Microorganisms are key components for plant biomass breakdown within rumen environments. Gram negative Fibrobacter succinogenes have been identified as being active and dominant cellulolytic members of the rumen. In this study, F. succinogenes type strain S85 was adapted for steady state growth in continuous culture at pH 5.75 and confirmed to grow in the range of pH 5.60-5.65, which is lower than has been reported previously. more...

Organism:

Fibrobacter succinogenes subsp. succinogenes S85

Type:

Expression profiling by high throughput sequencing

Platform:

GPL22970

10 Samples

Download data: CSV, TXT