GEO DataSets

(Submitter supplied) The aim of this study was to evaluate changes in the transcriptome due to the lack of PKAc1 in light or darkness. As the cAMP pathway represents an output pathway of heterotrimeric G-protein signaling PKAc1 is likely to be important for regulation of enzymes in response to different nutrient conditions. Also, a light dependent effect was found earlier.

Organism:

Trichoderma reesei

Type:

Expression profiling by array

Platform:

GPL10642

8 Samples

Download data: PAIR

(Submitter supplied) The aim of this study was to evaluate changes in the transcriptome in the mentioned strains during mating conditions

Organism:

Trichoderma reesei

Type:

Expression profiling by array

Platforms:

GPL16051 GPL10642

10 Samples

Download data: PAIR, TXT

(Submitter supplied) The aim of this study was to evaluate changes in the transcriptome due to the lack of CRE1 in light or darkness.

Organism:

Trichoderma reesei

Type:

Expression profiling by array

Platform:

GPL10642

8 Samples

Download data: PAIR

(Submitter supplied) The aim of this study was to evaluate changes in the transcriptome in the mentioned strains upon growth on cellulose

Organism:

Trichoderma reesei

Type:

Expression profiling by array

Platforms:

GPL10642 GPL16051

10 Samples

Download data: PAIR, TXT

(Submitter supplied) The aim of this study was to evaluate changes in the transcriptome upon growth on different carbon sources in light or darkness.

Organism:

Trichoderma reesei

Type:

Expression profiling by array

Platform:

GPL10642

20 Samples

Download data: PAIR

(Submitter supplied) Wheat straw grown cultures of T. reesei QM9414 were supplemented with 100 µM L-methionine and the genome wide gene expression monitored in order to find novel L-Methionine repressible genes.

Organism:

Trichoderma reesei; Trichoderma reesei QM9414

Type:

Expression profiling by array

Platform:

GPL10642

4 Samples

Download data: PAIR

(Submitter supplied) The aim of this study was to evaluate changes in the transcriptome due to the lack of adenylate cyclase in light or darkness. As the cAMP pathway represents an output pathway of heterotrimeric G-protein signaling ACY1 is likely to be important for regulation of enzymes in response to different nutrient conditions. Also, a light dependent effect was found earlier.

Organism:

Trichoderma reesei

Type:

Expression profiling by array

Platform:

GPL10642

8 Samples

Download data: PAIR

(Submitter supplied) We have examined and compared the transcriptome of T. reesei growing on wheat straw and lactose as carbon sources under otherwise similar conditions. Gene expression on wheat straw exceeded that on lactose, and 1619 genes were found to be only induced on wheat straw but not on lactose. They comprised 30 % of the CAZome, but were also enriched in genes associated with phospholipid metabolism, DNA synthesis and repair and iron homeostatis. more...

Organism:

Trichoderma reesei; Trichoderma reesei QM9414

Type:

Expression profiling by array

Platform:

GPL10642

3 Samples

Download data: PAIR, TXT

(Submitter supplied) Lactose (1,4-0-ß-d-galactopyranosyl-d-glucose), a by-product from cheese manufacture or whey processing industries, is known to induce the formation of plant biomass hydrolyzing enzymes needed for the biorefinery industry in the fungus Trichoderma reesei, but the reason for this induction and the underlying mechanism are not fully understood. Here, we used systems analysis of the Trichoderma reesei transcriptome during utilization of lactose. more...

Organism:

Trichoderma reesei

Type:

Expression profiling by array

Platform:

GPL10642

6 Samples

Download data: PAIR, TXT

(Submitter supplied) Investigation of whole genome gene expression level changes in response to different light conditions of the H. jecorina CBS999.97(MAT1-2) parental strain (W) and the deletion strain delta-env1 (E). These two strains were grown on malt extract agar(Merck) at 25℃ in four different conditions: (1) 24L: constant light illumination (24L); (2) 12L12D: in a 12h light/dark cycle and then 6h light illumination; (3) 12D12L: in a 12h dark/light cycle and then 6h constant darknes; (4) 24D: constant darkness. more...

Organism:

Trichoderma reesei

Type:

Expression profiling by array

Platform:

GPL10642

24 Samples

Download data: PAIR

(Submitter supplied) Investigation of whole genome gene expression level changes in response to different light conditions of the T. reesei QM9414 deletion strains delta-blr1, delta-blr2 and delta env1 cultivated on 1% microcrystalline cellulose. Perception and proper interpretation of environmental signals is crucial for survival in any natural habitat. Although the biotechnological workhorse Trichoderma reesei (Hypocrea jecorina) is predominantly known for its capability of efficient plant cell wall degradation, recent studies show that it has not lost its evolutionary heritage. more...

Organism:

Trichoderma reesei

Type:

Expression profiling by array

Platform:

GPL10642

16 Samples

Download data: CALLS, PAIR

(Submitter supplied) The asexual spore or conidium plays a critical role in the life cycle of many filamentous fungi, being the primary means for dispersion in the environment. To investigate the transcriptional changes taking place during the sporulation phase in T. reesei, which culminates with the production of the conidiospores, microarray experiments were performed. Among the 1,994 distinct genes displaying >90 % confidence , a total of 900 were classified as differentially expressed, relative to time zero of sporulation, at at least one of the time points analyzed. more...

Organism:

Trichoderma reesei

Type:

Expression profiling by array

Platform:

GPL10642

4 Samples

Download data: PAIR, TXT

(Submitter supplied) Investigation of whole genome gene expression level changes in response to different light conditions of the T. reesei QM9414 parental strain and the deletion strains delta-phlp1, delta-gnb1 and delta gng1, cultivated on 1 % microcrystalline cellulose. The mutants analyzed in this study are further described in Tisch et al. 2011: Carbohydrate degradation is significantly regulated by light and the phosducin like protein PhLP1 in Trichoderma reesei (Hypocrea jecorina).

Organism:

Trichoderma reesei

Type:

Expression profiling by array

Platform:

GPL10642

16 Samples

Download data: CALLS, PAIR

(Submitter supplied) The mitosporic fungus Trichoderma reesei is an industrial producer of enzymes for degradation of lignocellulosic polysaccharides to soluble monomers that can be fermented to biofuels. The genes encoding these enzymes in T. reesei have recently been shown to be clustered in the genome. Here we will show that the expression of these genes is epigenetically controlled at the heterochromatin level by the protein methyltransferase LAE1. more...

Organism:

Trichoderma reesei

Type:

Expression profiling by array

Platform:

GPL10642

8 Samples

Download data: CALLS, PAIR, TXT

(Submitter supplied) NimbleGen custom expression design for Trichoderma reesei (+4 additional control transcripts). Picked 7 probes per gene for 9127 out of 9147 transcripts (9126 exemplars, 10 transcripts with less than 7 probes). Total of 63836 probes. NimbleGen design ID: 10269 NimbleGen design files linked below. Trire2 genome database for T. reesei vs. 2.0, from which the oligonucleotides were designed (http://genome.jgi-psf.org/Trire2/Trire2.home.html) The T. more...

Organism:

Trichoderma reesei

1 Series

1 Related Platform

20 Samples

Download data

(Submitter supplied) NimbleGen custom expression design for Trichoderma reesei (+4 additional control transcripts). Picked 7 probes per gene for 9127 out of 9147 transcripts (9126 exemplars, 10 transcripts with less than 7 probes). Total of 63836 probes. NimbleGen design ID: 10269 NimbleGen design files linked below. Trire2 genome database for T. reesei vs. 2.0, from which the oligonucleotides were designed (http://genome.jgi-psf.org/Trire2/Trire2.home.html) The T. more...

Organism:

Trichoderma reesei

14 Series

1 Related Platform

129 Samples

Download data: NDF, NGD