GPL11000[Accession] - GEO DataSets

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Select item 2000574381.

Evolution of microRNA transcriptome at the onset of Drosophila metamorphosis

(Submitter supplied) MicroRNAs (miRNAs) are endogenous RNA molecules that contribute to the regulation of gene expression post-transcriptionally. Recently, patterns of sequence evolution and evolutionary emergence of miRNAs have been analyzed in detail. However, the extent to which miRNA expression levels vary within and between species, the role of stabilizing selection versus other evolutionary mechanisms in shaping the temporal dynamics of these changes, and how this variation might unveil the interplay between miRNAs and mRNAs remain poorly understood. more...

Organism:: Drosophila melanogaster; Drosophila yakuba; Drosophila simulans

Type:: Non-coding RNA profiling by high throughput sequencing

Platforms:: GPL9394 GPL9058 GPL11000
12 Samples

Download data: TXT, XLS

Series

Accession:: GSE57438

ID:: 200057438

PubMed Similar studies SRA Run Selector

Select item 2000508192.

modENCODE_White Lab: genome-wide ChIP-chip and ChIP-seq data [D. yakuba H3K27me3]

Organism:: Drosophila yakuba

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL11000
3 Samples

Download data: BED, WIG

Series

Accession:: GSE50819

ID:: 200050819

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000499453.

Genome-wide comparative ChIP-seq data of H3K27me3 and RNA-seq data in Drosophila white prepupa on Illumina Genome Analyzer

(Submitter supplied) This data consists of RNA-seq data of whole animal white pre pupa of four Drosophila species: Drosophila melanogaster, Drosophila simulans, Drosophila yakuba, and Drosophila pseudoobscura. The processed RPKM values are calculated following the method in Garber et al 2011 Nature Methods paper.

Organism:: Drosophila simulans; Drosophila melanogaster; Drosophila pseudoobscura; Drosophila yakuba

Type:: Expression profiling by high throughput sequencing

4 related Platforms
4 Samples

Download data: TXT

Series

Accession:: GSE49945

ID:: 200049945

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000244494.

Genome-wide comparative ChIP-seq data of CTCF and RNA-seq data in Drosophila white prepupa on Illumina Genome Analyzer

(Submitter supplied) This is a dataset which comprises the following two different kinds of genomic data in Drosophila species: First, triplicate ChIP-seq data of CTCF (CCCTC binding factor) binding profiles in each of the four closely related Drosophila species : Drosophila melanogaster, Drosophila simulans, Drosophila yakuba and Drosophila pseudoobscura at white pre pupa stage; Second, triplicate RNA-seq data of white pre pupa whole animals of three Drosophila species: Drosophila melanogaster, Drosophila simulans and Drosophila yakub. more...

Organism:: Drosophila pseudoobscura; Drosophila simulans; Drosophila melanogaster; Drosophila yakuba

Type:: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing

4 related Platforms
21 Samples

Download data: BED, TXT, WIG

Series

Accession:: GSE24449

ID:: 200024449

PubMed Full text in PMC Similar studies modENCODE SRA Run Selector

Select item 2000369205.

Reshaping of global gene expression networks and sex-biased gene expression by integration of a nascent gene

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Drosophila simulans; Drosophila yakuba; Drosophila melanogaster

Type:: Genome binding/occupancy profiling by genome tiling array; Expression profiling by array; Expression profiling by high throughput sequencing

5 related Platforms
32 Samples

Download data: BAR, CEL, TXT

Series

Accession:: GSE36920

ID:: 200036920

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000367646.

Expression profiling of Drosophila testes

(Submitter supplied) We performed mRNA-seq of dissected testes of multiple Drosophila species and RNAi animals

Organism:: Drosophila simulans; Drosophila melanogaster; Drosophila yakuba

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL9394 GPL9058 GPL11000
8 Samples

Download data: TXT

Series

Accession:: GSE36764

ID:: 200036764

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000256577.

modENCODE_White Lab: genome-wide ChIP data of KW3-Pcl-D2 from D.yak_E0-4h on Illumina Genome Analyzer.

(Submitter supplied) This is a dataset generated by the Drosophila Regulatory Elements modENCODE Project led by Kevin P. White at the University of Chicago. It contains genome-wide binding profile of the factor KW3-Pcl-D2 from D.yak_E0-4h generated by ChIP and analyzed on Illumina Genome Analyzer. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf

Organism:: Drosophila yakuba

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL11000
2 Samples

Download data: BED, BEDGRAPH

Series

Accession:: GSE25657

ID:: 200025657

PubMed Full text in PMC Similar studies modENCODE

Select item 2000256558.

modENCODE_White Lab: genome-wide ChIP data of KW3-Psq-D2 from D.yak_E0-4h on Illumina Genome Analyzer.

(Submitter supplied) This is a dataset generated by the Drosophila Regulatory Elements modENCODE Project led by Kevin P. White at the University of Chicago. It contains genome-wide binding profile of the factor KW3-Psq-D2 from D.yak_E0-4h generated by ChIP and analyzed on Illumina Genome Analyzer. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf

Organism:: Drosophila yakuba

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL11000
2 Samples

Download data: BED, BEDGRAPH

Series

Accession:: GSE25655

ID:: 200025655

PubMed Full text in PMC Similar studies modENCODE

Select item 2000256549.

modENCODE_White Lab: genome-wide ChIP data of KW3-Kr-D2 from D.yak_E0-4h on Illumina Genome Analyzer.

(Submitter supplied) This is a dataset generated by the Drosophila Regulatory Elements modENCODE Project led by Kevin P. White at the University of Chicago. It contains genome-wide binding profile of the factor KW3-Kr-D2 from D.yak_E0-4h generated by ChIP and analyzed on Illumina Genome Analyzer. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf

Organism:: Drosophila yakuba

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL11000
2 Samples

Download data: BED, BEDGRAPH

Series

Accession:: GSE25654

ID:: 200025654

PubMed Full text in PMC Similar studies modENCODE

Select item 20002565010.

modENCODE_White Lab: genome-wide ChIP data of KW3-Trl-D2 from D.yak_WPP on Illumina Genome Analyzer.

(Submitter supplied) This is a dataset generated by the Drosophila Regulatory Elements modENCODE Project led by Kevin P. White at the University of Chicago. It contains genome-wide binding profile of the factor KW3-Trl-D2 from D.yak_WPP generated by ChIP and analyzed on Illumina Genome Analyzer. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf

Organism:: Drosophila yakuba

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL11000
2 Samples

Download data: BED, BEDGRAPH

Series

Accession:: GSE25650

ID:: 200025650

PubMed Full text in PMC Similar studies modENCODE

Select item 20002564611.

modENCODE_White Lab: genome-wide ChIP data of KW3-Trl-D2 from D.yak_E0-4h on Illumina Genome Analyzer.

(Submitter supplied) This is a dataset generated by the Drosophila Regulatory Elements modENCODE Project led by Kevin P. White at the University of Chicago. It contains genome-wide binding profile of the factor KW3-Trl-D2 from D.yak_E0-4h generated by ChIP and analyzed on Illumina Genome Analyzer. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf

Organism:: Drosophila yakuba

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL11000
2 Samples

Download data: BED, BEDGRAPH

Series

Accession:: GSE25646

ID:: 200025646

PubMed Full text in PMC Similar studies modENCODE

Select item 20002353712.

modENCODE_White Lab: genome-wide ChIP-chip and ChIP-Seq data

(Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf This SuperSeries is composed of the SubSeries listed below.