GEO DataSets

(Submitter supplied) A functional biodiversity microarray (EcoChip) prototype has been developed to facilitate the analysis of fungal communities in environmental samples with broad functional and phylogenetic coverage and to enable the incorporation of nucleic acid sequence data as they become available from large-scale (next generation) sequencing projects. A dual probe set (DPS) was designed to detect a) functional enzyme transcripts at conserved protein sites and b) phylogenetic barcoding transcripts at ITS regions present in precursor rRNA. more...

Organism:

soil metagenome

Type:

Expression profiling by array

Platform:

GPL13295

8 Samples

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(Submitter supplied) Agilent-028485 Myk-Array v3b 028483 Design ID: 028485 FuncPhyloArray v3b A custom-made EcoChip microarray consisting of about 9000 probes targeting expressed fungals genes and about 5000 probes targeting the precursor-rRNA of different fungal lineages. Source organisms of the array features are mainly soil fungi and plants. Protocol: see manufacturer's web site at http://www.agilent.com/

Organism:

soil metagenome

1 Series

8 Samples

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