GEO DataSets

(Submitter supplied) This platform represents an independent mapping of the probe sequences to TAIR10. The supplementary file contains the probe id (probeset_x_y), chromosome, start position and strand. Protocol: In collaboration with Affymetrix, the European AGRON-OMICS project has developed a new array including probes representing both strands of the entire Arabidopsis genome. Performance comparison with the ATH1 array indicates that both microarrays yield data of comparable quality, but that the new tiling array yields expression information for significantly more genes, since the ATH1 array profiles only about 65% of >33.000 TAIR9 annotated genes. more...

Organism:

Arabidopsis thaliana

3 Series

1 Related Platform

10 Samples

Download data: TXT

(Submitter supplied) http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/13.0.0/tairg.asp Protocol: In collaboration with Affymetrix, the European AGRON-OMICS project has developed a new array including probes representing both strands of the entire Arabidopsis genome. Performance comparison with the ATH1 array indicates that both microarrays yield data of comparable quality, but that the new tiling array yields expression information for significantly more genes, since the ATH1 array profiles only about 65% of >33.000 TAIR9 annotated genes. more...

Organism:

Arabidopsis thaliana

1 Series

1 Related Platform

18 Samples

Download data: ZIP

(Submitter supplied) In collaboration with Affymetrix, the European AGRON-OMICS project has developed a new array including probes representing both strands of the entire Arabidopsis genome. Performance comparison with the ATH1 array indicates that both microarrays yield data of comparable quality, but that the new tiling array yields expression information for significantly more genes, since the ATH1 array profiles only about 65% of >33.000 TAIR9 annotated genes. more...

Organism:

Arabidopsis thaliana

3 Series

1 Related Platform

33 Samples

Download data: CDF

(Submitter supplied) In collaboration with Affymetrix, the European AGRON-OMICS project has developed a new array including probes representing both strands of the entire Arabidopsis genome. Performance comparison with the ATH1 array indicates that both microarrays yield data of comparable quality, but that the new tiling array yields expression information for significantly more genes, since the ATH1 array profiles only about 65% of >33.000 TAIR9 annotated genes. more...

Organism:

Arabidopsis thaliana

1 Series

1 Related Platform

48 Samples

Download data: CDF

(Submitter supplied) The TAIR9 CDF was used. Reference Platform with TAIR7 mapping is contained in GEO as GPL13479. Protocol: In collaboration with Affymetrix, the European AGRON-OMICS project has developed a new array including probes representing both strands of the entire Arabidopsis genome. Performance comparison with the ATH1 array indicates that both microarrays yield data of comparable quality, but that the new tiling array yields expression information for significantly more genes, since the ATH1 array profiles only about 65% of >33.000 TAIR9 annotated genes. more...

Organism:

Arabidopsis thaliana

8 Series

1 Related Platform

92 Samples

Download data: CDF