GEO DataSets

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Hordeum vulgare

Type:

Expression profiling by high throughput sequencing; Other; Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL29652

34 Samples

Download data: BW

(Submitter supplied) We define the promotoreome sequence and epigenetic architecture in barley embryos to both put it into evolutionary perspective and to serve as a reference for agricultural and research biotechnology in cereals.

Organism:

Hordeum vulgare

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL29652

28 Samples

Download data: BW

(Submitter supplied) We define the promotoreome sequence and epigenetic architecture in barley embryos to both put it into evolutionary perspective and to serve as a reference for agricultural and research biotechnology in cereals.

Organism:

Hordeum vulgare

Type:

Expression profiling by high throughput sequencing; Other

Platform:

GPL29652

6 Samples

Download data: BW

(Submitter supplied) Maintaining genome integrity presents a particular challenge for plants due to their sedentary lifestyle, which disables direct avoidance of unfavorable external conditions. Additionally, plants’ metabolic processes generate reactive molecules as by-products of e.g. photosynthesis, creating internal DNA-damaging conditions. Due to this, plants have developed a unique and strictly regulated web of DNA damage responses (DDR). more...

Organism:

Hordeum vulgare

Type:

Expression profiling by high throughput sequencing

Platform:

GPL29652

12 Samples

Download data: TXT, XLSX

(Submitter supplied) Comparative analysis of nascent transcription among plant species

Organism:

Carica papaya; Arabidopsis thaliana; Chlamydomonas reinhardtii; Zea mays; Physcomitrium patens; Hordeum vulgare; Drosophila melanogaster; Selaginella moellendorffii

Type:

Expression profiling by high throughput sequencing; Other; Non-coding RNA profiling by high throughput sequencing

17 related Platforms

68 Samples

Download data: BED, TXT, XLSX

(Submitter supplied) To provide comprehensive spatiotemporal information about biological processes in developing grains of cultivated barley (Hordeum vulgare subsp. vulgare), we performed a chromatin immunoprecipitation of H3K27me3 followed by high-throughput sequencing (ChIP-seq) in barley endosperm at 16 days after pollination.

Organism:

Hordeum vulgare

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL29652

6 Samples

Download data: BROADPEAK, BW

(Submitter supplied) RNA-seq was carried out on the leaves of BCS8 and BCS24 after 7 days of drought treatment in order to better understand the molecular pathways underlying drought tolerance and to find the relevant candidate genes.

Organism:

Hordeum vulgare

Type:

Expression profiling by high throughput sequencing

Platform:

GPL29652

12 Samples

Download data: TXT

(Submitter supplied) We used a transcriptome sequencing approach to analyze different expression levels of three barley varieties under both infected and uninfected conditions

Organism:

Hordeum vulgare

Type:

Expression profiling by high throughput sequencing

Platform:

GPL29652

18 Samples

Download data: XLS

(Submitter supplied) Many plants associate with arbuscular mycorrhizal fungi for nutrient acquisition, while legumes also associate with nitrogen-fixing rhizobial bacteria. Both associations rely on symbiosis signaling and here we show that cereals can perceive lipochitooligosaccharides (LCOs) for activation of symbiosis signaling, surprisingly including Nod factors produced by nitrogen-fixing bacteria. However, legumes show stringent perception of specifically decorated LCOs, that is absent in cereals. more...

Organism:

Medicago truncatula; Hordeum vulgare

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL30272 GPL29652

90 Samples

Download data: TSV

(Submitter supplied) The aim of this study was to uncover the differential transcription regulation pathways between immature embryo (IME)- and mature embryo (ME)-derived callus formation through transcriptome sequencing. We showed that incubation of embryos on auxin-rich medium caused dramatic changes in gene expression profiles within 48 h. A total of 9330 and 11318 differentially expressed genes (DEGs) were found in the IME and ME systems, respectively. more...

Organism:

Hordeum vulgare

Type:

Expression profiling by high throughput sequencing

Platform:

GPL29652

15 Samples

Download data: FA, TXT