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Items: 6

1.

Genome-wide RNA Polymerase II binding signal in Arabidopsis thaliana

(Submitter supplied) Several studies indicate that plant MIR genes are transcribed by RNA Pol II, similar to what is found in animals (Cai et al., 2004; Lee et al., 2004). By sequencing the 5' transcript ends Xie et al. (2005) mapped the transcription start sites (TSSs) for 52 MIR genes. This list was expanded upon through computational prediction of the core promoters (Zhou et al., 2007). In addition to the TATA box sequence motifs located upstream of the TSSs (Xie et al. more...
Organism:
Arabidopsis thaliana
Type:
Genome binding/occupancy profiling by genome tiling array
Platform:
GPL8416
1 Sample
Download data: BAR, CEL
Series
Accession:
GSE35608
ID:
200035608

2.

Brassinosteroid (BR) plant hormone signaling

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Arabidopsis thaliana
Type:
Genome binding/occupancy profiling by genome tiling array; Expression profiling by array
Platforms:
GPL198 GPL8416
10 Samples
Download data: BAR, BED, BPMAP, CEL, TXT
Series
Accession:
GSE25135
ID:
200025135

PubMed Full text in PMC Similar studies Analyze with GEO2R

3.

Genome-wide mapping of the HY5-mediated gene networks in Arabidopsis that involve both transcriptional and post-transcriptional regulations

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Arabidopsis thaliana
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by genome tiling array
Platforms:
GPL8416 GPL9062
14 Samples
Download data: CEL, TXT
Series
Accession:
GSE24974
ID:
200024974

PubMed Full text in PMC Similar studies

4.

Genome-wide mapping of the HY5-mediated gene networks in Arabidopsis that involve both transcriptional and post-transcriptional regulations: ChIP-Chip

(Submitter supplied) LONG HYPOCOTYL 5 (HY5) is a basic leucine zipper transcription factor (TF) that functions downstream of multiple families of photoreceptors. Mutations in the HY5 gene cause a myriad of aberrant phenotypes in Arabidopsis, including elongated hypocotyl, reduced accumulation of pigments, halted chloroplast development in greening hypocotyls, altered root morphology and defective hormonal and stimulus responses. more...
Organism:
Arabidopsis thaliana
Type:
Genome binding/occupancy profiling by genome tiling array
Platform:
GPL8416
12 Samples
Download data: CEL, TXT
Series
Accession:
GSE24973
ID:
200024973

PubMed Full text in PMC Similar studies

5.

Genome wide BZR1 binding site analysis in Arabidopsis

(Submitter supplied) BR induces rapid dephosphorylation and nuclear localization of BZR1 through a cascade of signaling events thus regulates BR-responsive gene expression and plant development. We use chromatin-immunoprecipitation microarray (ChIP-chip) experiments identified about 2200 high confidence BZR1 binding sites, which includes all previous known binding regions. The binding sites are distributed throughout the genome but are rare in the centromere regions, which is similar to the distribution of expressed genes. more...
Organism:
Arabidopsis thaliana
Type:
Genome binding/occupancy profiling by genome tiling array
Platform:
GPL8416
1 Sample
Download data: BAR, BED, BPMAP, CEL, TXT
Series
Accession:
GSE23774
ID:
200023774

PubMed Full text in PMC Similar studies

6.

Epigenetic Control of Light-Regulated Gene Expression in Arabidopsis

(Submitter supplied) Although landscapes of several epigenetic marks are now available for Arabidopsis and rice, such profiles remain static and do not provide information about dynamic changes of plant epigenomes in response to developmental or environmental cues. Here we analyzed the effects of light regulation on four epigenetic histone modifications (H3K9ac, H3K9me3, H3K27ac, H3K27me3). Our genome-wide profiling of H3K9ac and H3K27ac revealed that these modifications are gene-specific. more...
Organism:
Arabidopsis thaliana
Type:
Genome binding/occupancy profiling by genome tiling array
Platform:
GPL8416
40 Samples
Download data: CEL, TXT
Series
Accession:
GSE15597
ID:
200015597

PubMed Full text in PMC Similar studies

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