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Items: 16

1.

DIP-chip from Cbf1, Leu3, Pho2, Pho4, Rap1, Rox1, and Swi5

(Submitter supplied) DNA Immunoprecipitation was performed using purified, naked, genomic DNA and purified recombinant DNA binding domains for S. cerevisiae transcription factors (Cbf1, Leu3, Pho2, Pho4, Rap1, Rox1, and Swi5) and then competitively hybridized against input DNA on NimbleGen 385k whole-genome, 32bp, tiling arrays to identify the consensus sequence for each transcription factor as a whole in the genome.
Organism:
Saccharomyces cerevisiae
Type:
Genome binding/occupancy profiling by genome tiling array
Platform:
GPL7699
14 Samples
Download data: GFF, PAIR, TIFF
Series
Accession:
GSE13751
ID:
200013751

PubMed Full text in PMC Similar studies Analyze with GEO2R

2.

NimbleGen 385k S. cerevisiae 32bp tiling array

(Submitter supplied) S. cerevisiae whole-genome tiling arrays covering entire genome at 32bp resolution with 50bp probes. 385,000 probes total. Protocol: Singh-Gasson S, Green RD, Yue Y, Nelson C, Blattner F, Sussman MR,Cerrina F. Maskless fabrication of light-directed oligonucleotide microarrays using a digital micromirror array. Nat Biotechnol. 1999 Oct;17(10):974-8. PMID: 10504697
Organism:
Saccharomyces cerevisiae
5 Series
19 Samples
Download data: NDF, POS
Platform
Accession:
GPL7699
ID:
100007699

PubMed Similar studies

3.

Swi5 40nM DIP-chip Replicate B

Organism:
Saccharomyces cerevisiae
Source name:
MBP-Swi5DBD DIP DNA (channel 1) S288C Genomic DNA (channel 2)
Platform:
GPL7699
Series:
GSE13751
Download data: GFF, PAIR, TIFF
Sample
Accession:
GSM345432
ID:
300345432

4.

Swi5 40nM DIP-chip Replicate A

Organism:
Saccharomyces cerevisiae
Source name:
MBP-Swi5DBD DIP DNA (channel 1) S288C Genomic DNA (channel 2)
Platform:
GPL7699
Series:
GSE13751
Download data: GFF, PAIR, TIFF
Sample
Accession:
GSM345431
ID:
300345431

5.

Rox1 40nM DIP-chip Replicate B

Organism:
Saccharomyces cerevisiae
Source name:
MBP-Rox1DBD DIP DNA (channel 1) S288C Genomic DNA (channel 2)
Platform:
GPL7699
Series:
GSE13751
Download data: GFF, PAIR, TIFF
Sample
Accession:
GSM345430
ID:
300345430

6.

Rox1 40nM DIP-chip Replicate A

Organism:
Saccharomyces cerevisiae
Source name:
MBP-Rox1DBD DIP DNA (channel 1) S288C Genomic DNA (channel 2)
Platform:
GPL7699
Series:
GSE13751
Download data: GFF, PAIR, TIFF
Sample
Accession:
GSM345429
ID:
300345429

7.

Rap1 40nM DIP-chip Replicate B

Organism:
Saccharomyces cerevisiae
Source name:
MBP-Rap1DBD DIP DNA (channel 1) S288C Genomic DNA (channel 2)
Platform:
GPL7699
Series:
GSE13751
Download data: GFF, PAIR, TIFF
Sample
Accession:
GSM345421
ID:
300345421

8.

Rap1 40nM DIP-chip Replicate A

Organism:
Saccharomyces cerevisiae
Source name:
MBP-Rap1DBD DIP DNA (channel 1) S288C Genomic DNA (channel 2)
Platform:
GPL7699
Series:
GSE13751
Download data: GFF, PAIR, TIFF
Sample
Accession:
GSM345420
ID:
300345420

9.

Pho4 40nM DIP-chip Replicate B

Organism:
Saccharomyces cerevisiae
Source name:
MBP-Pho4DBD DIP DNA (channel 1) S288C Genomic DNA (channel 2)
Platform:
GPL7699
Series:
GSE13751
Download data: GFF, PAIR, TIFF
Sample
Accession:
GSM345419
ID:
300345419

10.

Pho4 40nM DIP-chip Replicate A

Organism:
Saccharomyces cerevisiae
Source name:
MBP-Pho4DBD DIP DNA (channel 1) S288C Genomic DNA (channel 2)
Platform:
GPL7699
Series:
GSE13751
Download data: GFF, PAIR, TIFF
Sample
Accession:
GSM345418
ID:
300345418

11.

Pho2 40nM DIP-chip Replicate B

Organism:
Saccharomyces cerevisiae
Source name:
MBP-Pho2DBD DIP DNA (channel 1) S288C Genomic DNA (channel 2)
Platform:
GPL7699
Series:
GSE13751
Download data: GFF, PAIR, TIFF
Sample
Accession:
GSM345417
ID:
300345417

12.

Pho2 40nM DIP-chip Replicate A

Organism:
Saccharomyces cerevisiae
Source name:
MBP-Pho2DBD DIP DNA (channel 1) S288C Genomic DNA (channel 2)
Platform:
GPL7699
Series:
GSE13751
Download data: GFF, PAIR, TIFF
Sample
Accession:
GSM345416
ID:
300345416

13.

Leu3 40nM DIP-chip Replicate B

Organism:
Saccharomyces cerevisiae
Source name:
MBP-Leu3DBD DIP DNA (channel 1) S288C Genomic DNA (channel 2)
Platform:
GPL7699
Series:
GSE13751
Download data: GFF, PAIR, TIFF
Sample
Accession:
GSM345415
ID:
300345415

14.

Leu3 40nM DIP-chip Replicate A

Organism:
Saccharomyces cerevisiae
Source name:
MBP-Leu3DBD DIP DNA (channel 1) S288C Genomic DNA (channel 2)
Platform:
GPL7699
Series:
GSE13751
Download data: GFF, PAIR, TIFF
Sample
Accession:
GSM345414
ID:
300345414

15.

Cbf1 40nM DIP-chip Replicate B

Organism:
Saccharomyces cerevisiae
Source name:
MBP-Cbf1DBD DIP DNA (channel 1) S288C Genomic DNA (channel 2)
Platform:
GPL7699
Series:
GSE13751
Download data: GFF, PAIR, TIFF
Sample
Accession:
GSM345403
ID:
300345403

16.

Cbf1 40nM DIP-chip Replicate A

Organism:
Saccharomyces cerevisiae
Source name:
MBP-Cbf1DBD DIP DNA (channel 1) S288C Genomic DNA (channel 2)
Platform:
GPL7699
Series:
GSE13751
Download data: PAIR, TIFF
Sample
Accession:
GSM345371
ID:
300345371

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