GSE193247[Accession] - GEO DataSets - NCBI

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Select item 2001932471.

RNA degradome analysis reveals substrates of NYN-domain containing DNE1 endoribonuclease in Arabidopsis

(Submitter supplied) To gain insight into the functional role of DNE1 in cytoplasmic mRNA decay, we performed Parallel Analysis of RNA Ends (PARE) and Global Mapping of Uncapped and Cleaved Transcripts (GMUCT) analysis to identify DNE1-dependent cleavage sites based on their sensitivity to XRN4 within the Arabidopsis transcriptome

Organism:: Arabidopsis thaliana

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL17639 GPL24270
24 Samples

Download data: BEDGRAPH, DIFF

Series

Accession:: GSE193247

ID:: 200193247

PubMed Full text in PMC Similar studies

Select item 1000242702.

NextSeq 550 (Arabidopsis thaliana)

Organism:: Arabidopsis thaliana

48 Series
766 Samples

Platform

Accession:: GPL24270

ID:: 100024270

Select item 1000176393.

Illumina HiSeq 2500 (Arabidopsis thaliana)

Organism:: Arabidopsis thaliana

799 Series
14215 Samples

Platform

Accession:: GPL17639

ID:: 100017639

Select item 3057773074.

Organism:: Arabidopsis thaliana

Source name:: six-week-old rosette leaves

Platform:: GPL17639
Series:: GSE193247

Sample

Accession:: GSM5777307

ID:: 305777307

SRA Run Selector

Select item 3057773065.

Organism:: Arabidopsis thaliana

Source name:: six-week-old rosette leaves

Platform:: GPL17639
Series:: GSE193247

Sample

Accession:: GSM5777306

ID:: 305777306

SRA Run Selector

Select item 3057773056.

Organism:: Arabidopsis thaliana

Source name:: six-week-old rosette leaves

Platform:: GPL17639
Series:: GSE193247

Sample

Accession:: GSM5777305

ID:: 305777305

SRA Run Selector

Select item 3057773047.

Organism:: Arabidopsis thaliana

Source name:: six-week-old rosette leaves

Platform:: GPL17639
Series:: GSE193247

Sample

Accession:: GSM5777304

ID:: 305777304

SRA Run Selector

Select item 3057773038.

Organism:: Arabidopsis thaliana

Source name:: six-week-old rosette leaves

Platform:: GPL17639
Series:: GSE193247

Sample

Accession:: GSM5777303

ID:: 305777303

SRA Run Selector

Select item 3057773029.

Organism:: Arabidopsis thaliana

Source name:: six-week-old rosette leaves

Platform:: GPL17639
Series:: GSE193247

Sample

Accession:: GSM5777302

ID:: 305777302

SRA Run Selector

Select item 30577731910.

Organism:: Arabidopsis thaliana

Source name:: two-week-old seedlings

Platform:: GPL24270
Series:: GSE193247

Sample

Accession:: GSM5777319

ID:: 305777319

SRA Run Selector

Select item 30577731811.

Organism:: Arabidopsis thaliana

Source name:: two-week-old seedlings

Platform:: GPL24270
Series:: GSE193247

Sample

Accession:: GSM5777318

ID:: 305777318

SRA Run Selector

Select item 30577731712.

Organism:: Arabidopsis thaliana

Source name:: two-week-old seedlings

Platform:: GPL24270
Series:: GSE193247

Sample

Accession:: GSM5777317

ID:: 305777317

SRA Run Selector

Select item 30577731613.

Organism:: Arabidopsis thaliana

Source name:: two-week-old seedlings

Platform:: GPL24270
Series:: GSE193247

Sample

Accession:: GSM5777316

ID:: 305777316

SRA Run Selector

Select item 30577731514.

Organism:: Arabidopsis thaliana

Source name:: two-week-old seedlings

Platform:: GPL24270
Series:: GSE193247

Sample

Accession:: GSM5777315

ID:: 305777315

SRA Run Selector

Select item 30577731415.

Organism:: Arabidopsis thaliana

Source name:: two-week-old seedlings

Platform:: GPL24270
Series:: GSE193247

Sample

Accession:: GSM5777314

ID:: 305777314

SRA Run Selector

Select item 30577731316.

Organism:: Arabidopsis thaliana

Source name:: two-week-old seedlings

Platform:: GPL24270
Series:: GSE193247

Sample

Accession:: GSM5777313

ID:: 305777313

SRA Run Selector

Select item 30577731217.

Organism:: Arabidopsis thaliana

Source name:: two-week-old seedlings

Platform:: GPL24270
Series:: GSE193247

Sample

Accession:: GSM5777312

ID:: 305777312

SRA Run Selector

Select item 30577731118.

Organism:: Arabidopsis thaliana

Source name:: two-week-old seedlings

Platform:: GPL24270
Series:: GSE193247

Sample

Accession:: GSM5777311

ID:: 305777311

SRA Run Selector

Select item 30577731019.

Organism:: Arabidopsis thaliana

Source name:: two-week-old seedlings

Platform:: GPL24270
Series:: GSE193247

Sample

Accession:: GSM5777310

ID:: 305777310

SRA Run Selector

Select item 30577730920.

Organism:: Arabidopsis thaliana

Source name:: two-week-old seedlings

Platform:: GPL24270
Series:: GSE193247

Sample

Accession:: GSM5777309

ID:: 305777309

SRA Run Selector

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