GSE196171[Accession] - GEO DataSets - NCBI

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Items: 20

Select item 2001961711.

Whole genome functional characterization of RE1 silencers using a modified massively parallel reporter assay

(Submitter supplied) Both upregulation and downregulation by cis-regulatory elements help establish precise gene expression. Our understanding of how elements repress transcriptional activity is far more limited than activating elements. To address this gap, we characterized RE1, a group of transcriptional silencers bound by REST, on a genome-wide scale using an optimized massively parallel reporter assay (MPRAduo). MPRAduo empirically defined a minimal binding strength of REST required by silencer (REST m-value), above which multiple cofactors colocalize and act to directly silence transcription. more...

Organism:: Homo sapiens; synthetic construct

Type:: Other

5 related Platforms
14 Samples

Download data: TXT

Series

Accession:: GSE196171

ID:: 200196171

PubMed Full text in PMC Similar studies

Select item 1000276092.

NextSeq 550 (synthetic construct)

Organism:: synthetic construct

28 Series
593 Samples

Platform

Accession:: GPL27609

ID:: 100027609

Select item 1000265263.

Illumina NovaSeq 6000 (synthetic construct)

Organism:: synthetic construct

94 Series
564 Samples

Platform

Accession:: GPL26526

ID:: 100026526

Select item 1000246764.

Illumina NovaSeq 6000 (Homo sapiens)

Organism:: Homo sapiens

17049 Series
931958 Samples

Platform

Accession:: GPL24676

ID:: 100024676

Select item 1000216975.

NextSeq 550 (Homo sapiens)

Organism:: Homo sapiens

1487 Series
44345 Samples

Platform

Accession:: GPL21697

ID:: 100021697

Select item 1000177696.

Illumina MiSeq (synthetic construct)

Organism:: synthetic construct

100 Series
1225 Samples

Platform

Accession:: GPL17769

ID:: 100017769

Select item 3065285777.

tagcounts_noncanonical_plasmid

Organism:: synthetic construct

Source name:: plasmid vector

Platform:: GPL27609
Series:: GSE196171

Sample

Accession:: GSM6528577

ID:: 306528577

SRA Run Selector

Select item 3065285768.

tagcounts_noncanonical_K562

Organism:: Homo sapiens

Source name:: K562

Platform:: GPL21697
Series:: GSE196171

Sample

Accession:: GSM6528576

ID:: 306528576

SRA Run Selector

Select item 3065285789.

tagassociations_noncanonical

Organism:: synthetic construct

Source name:: plasmid vector

Platform:: GPL17769
Series:: GSE196171

Sample

Accession:: GSM6528578

ID:: 306528578

SRA Run Selector

Select item 30586160710.

Gm12878_benchmark_run2

Organism:: Homo sapiens

Source name:: GM12878

Platform:: GPL21697
Series:: GSE196171

Download data: TXT

Sample

Accession:: GSM5861607

ID:: 305861607

SRA Run Selector

Select item 30586160611.

Gm12878_benchmark_run1

Organism:: Homo sapiens

Source name:: GM12878

Platform:: GPL21697
Series:: GSE196171

Download data: TXT

Sample

Accession:: GSM5861606

ID:: 305861606

SRA Run Selector

Select item 30586161612.

tagassociations_WGREST

Organism:: synthetic construct

Source name:: plasmid vector

Platform:: GPL27609
Series:: GSE196171

Sample

Accession:: GSM5861616

ID:: 305861616

SRA Run Selector

Select item 30586160913.

tagcounts_benchmark_plasmid_run2

Organism:: synthetic construct

Source name:: plasmid vector

Platform:: GPL27609
Series:: GSE196171

Sample

Accession:: GSM5861609

ID:: 305861609

SRA Run Selector

Select item 30586160814.

tagcounts_benchmark_plasmid_run1

Organism:: synthetic construct

Source name:: plasmid vector

Platform:: GPL27609
Series:: GSE196171

Sample

Accession:: GSM5861608

ID:: 305861608

SRA Run Selector

Select item 30586161415.

tagcounts_WGREST_SKNSH

Organism:: Homo sapiens

Source name:: SK-N-SH

Platform:: GPL24676
Series:: GSE196171

Download data: TXT

Sample

Accession:: GSM5861614

ID:: 305861614

SRA Run Selector

Select item 30586161316.

tagcounts_WGREST_K562

Organism:: Homo sapiens

Source name:: K562

Platform:: GPL24676
Series:: GSE196171

Download data: TXT

Sample

Accession:: GSM5861613

ID:: 305861613

SRA Run Selector

Select item 30586161217.

tagcounts_WGREST_HepG2

Organism:: Homo sapiens

Source name:: HepG2

Platform:: GPL24676
Series:: GSE196171

Download data: TXT

Sample

Accession:: GSM5861612

ID:: 305861612

SRA Run Selector

Select item 30586161118.

tagcounts_WGREST_GM12878

Organism:: Homo sapiens

Source name:: GM12878

Platform:: GPL24676
Series:: GSE196171

Download data: TXT

Sample

Accession:: GSM5861611

ID:: 305861611

SRA Run Selector

Select item 30586161519.

tagcounts_WGREST_plasmid

Organism:: synthetic construct

Source name:: plasmid vector

Platform:: GPL26526
Series:: GSE196171

Sample

Accession:: GSM5861615

ID:: 305861615

SRA Run Selector

Select item 30586161020.

tagassociations_benchmark

Organism:: synthetic construct

Source name:: plasmid vector

Platform:: GPL17769
Series:: GSE196171

Sample

Accession:: GSM5861610

ID:: 305861610

SRA Run Selector

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GSE196171[Accession] (20)
GEO DataSets
macrophage infectivity potentiator, partial [Legionella sp. ST25009]
macrophage infectivity potentiator, partial [Legionella sp. ST25009]
gi|313870751|gb|ADR82260.1|

Protein

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