GSE217743[Accession] - GEO DataSets

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Items: 7

Select item 2002177431.

OmpC and bile tolerance are important for Escherichia coli colonization of the mammalian intestine

(Submitter supplied) Our focus of this study is to determine the gene expression changes in E. coli colonizing the mouse intestine as compared to E. coli grown in minimal medium in vitro. We colonized CD-1 male mice with E. coli MG1655 StrR wild type and extracted the total RNA from mouse cecal mucus. We also extracted E. coli MG1655 StrR RNA from in vitro culture and sequenced and compared to determine the genes important for E. more...

Organism:: Escherichia coli str. K-12 substr. MG1655

Type:: Expression profiling by high throughput sequencing

Platform:: GPL26592
5 Samples

Download data: WIG

Series

Accession:: GSE217743

ID:: 200217743

PubMed Full text in PMC Similar studies

Select item 1000265922.

Illumina NovaSeq 6000 (Escherichia coli str. K-12 substr. MG1655)

Organism:: Escherichia coli str. K-12 substr. MG1655

24 Series
1350 Samples

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Platform

Accession:: GPL26592

ID:: 100026592

Select item 3067256823.

MG1655 invitro E phase RNA_biol rep 2

Organism:: Escherichia coli str. K-12 substr. MG1655

Source name:: E. coli grown invitro culture

Platform:: GPL26592
Series:: GSE217743

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Sample

Accession:: GSM6725682

ID:: 306725682

SRA Run Selector

Select item 3067256814.

MG1655 invitro E phase RNA_biol rep 1

Organism:: Escherichia coli str. K-12 substr. MG1655

Source name:: E. coli grown invitro culture

Platform:: GPL26592
Series:: GSE217743

Download data: WIG

Sample

Accession:: GSM6725681

ID:: 306725681

SRA Run Selector

Select item 3067256805.

MG1655 mice RNA_biol rep 3

Organism:: Escherichia coli str. K-12 substr. MG1655

Source name:: mouse mucus from the cecum

Platform:: GPL26592
Series:: GSE217743

Download data: WIG

Sample

Accession:: GSM6725680

ID:: 306725680

SRA Run Selector

Select item 3067256796.

MG1655 mice RNA_biol rep 2

Organism:: Escherichia coli str. K-12 substr. MG1655

Source name:: mouse mucus from the cecum

Platform:: GPL26592
Series:: GSE217743

Download data: WIG

Sample

Accession:: GSM6725679

ID:: 306725679

SRA Run Selector

Select item 3067256787.

MG1655 mice RNA_biol rep 1

Organism:: Escherichia coli str. K-12 substr. MG1655

Source name:: mouse mucus from the cecum

Platform:: GPL26592
Series:: GSE217743

Download data: WIG

Sample

Accession:: GSM6725678

ID:: 306725678

SRA Run Selector

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GSE217743[Accession] (7)
GEO DataSets
20S proteasome beta 6 subunit [Trypanosoma brucei brucei]
20S proteasome beta 6 subunit [Trypanosoma brucei brucei]
gi|6224687|gb|AAF05905.1|AF148124_1

Protein
Chain 1, 20S proteasome
Chain 1, 20S proteasome
gi|21465668|pdb|1IRU|1

Protein
NADH dehydrogenase subunit 3 (mitochondrion) [Acropora aspera]
NADH dehydrogenase subunit 3 (mitochondrion) [Acropora aspera]
gi|558603334|ref|YP_008815436.1|

Protein
Plasmodium knowlesi strain H genome assembly, contig: PKNH_00_130, whole genome ...
Plasmodium knowlesi strain H genome assembly, contig: PKNH_00_130, whole genome shotgun sequence
gi|1977591076|ref|NW_024070166.1||g M:GCF_000006355.2|contig130

Nucleotide

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