GSE250329[Accession] - GEO DataSets - NCBI

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Select item 2002503291.

Interplay between coding and non-coding regulation drives the Arabidopsis seed-to-seedling transition (csRNA-seq)

(Submitter supplied) Translation of seed stored mRNAs is essential to trigger germination. However, when RNAPII re-engages RNA synthesis during the seed-to-seedling transition has remained in question. Combining csRNA-seq, ATAC-seq and smFISH in Arabidopsis thaliana we demonstrate that active transcription initiation is detectable during the entire germination process. Features of non-coding regulation such as dynamic changes in chromatin accessible regions, antisense transcription, as well as bidirectional non-coding promoters are widespread throughout the Arabidopsis genome. more...

Organism:: Arabidopsis thaliana

Type:: Non-coding RNA profiling by high throughput sequencing

Platform:: GPL19580
32 Samples

Download data: BED, BEDGRAPH, BW, TSV

Series

Accession:: GSE250329

ID:: 200250329

PubMed Full text in PMC Similar studies

Select item 1000195802.

Illumina NextSeq 500 (Arabidopsis thaliana)

Organism:: Arabidopsis thaliana

400 Series
9124 Samples

Platform

Accession:: GPL19580

ID:: 100019580

Select item 3079777273.

rrp4-2, 57h light, rep2, sRNA-seq

Organism:: Arabidopsis thaliana

Source name:: Seedlings

Platform:: GPL19580
Series:: GSE250329 GSE250331

Sample

Accession:: GSM7977727

ID:: 307977727

SRA Run Selector

Select item 3079777264.

rrp4-2, 57h light, rep1, sRNA-seq

Organism:: Arabidopsis thaliana

Source name:: Seedlings

Platform:: GPL19580
Series:: GSE250329 GSE250331

Download data: BEDGRAPH

Sample

Accession:: GSM7977726

ID:: 307977726

SRA Run Selector

Select item 3079777255.

hen2-4, 57h light, rep2, sRNA-seq

Organism:: Arabidopsis thaliana

Source name:: Seedlings

Platform:: GPL19580
Series:: GSE250329 GSE250331

Sample

Accession:: GSM7977725

ID:: 307977725

SRA Run Selector

Select item 3079777246.

hen2-4, 57h light, rep1, sRNA-seq

Organism:: Arabidopsis thaliana

Source name:: Seedlings

Platform:: GPL19580
Series:: GSE250329 GSE250331

Download data: BEDGRAPH

Sample

Accession:: GSM7977724

ID:: 307977724

SRA Run Selector

Select item 3079777237.

Seedling, 57h light, rep2, sRNA-seq

Organism:: Arabidopsis thaliana

Source name:: Seedlings

Platform:: GPL19580
Series:: GSE250329 GSE250331

Sample

Accession:: GSM7977723

ID:: 307977723

SRA Run Selector

Select item 3079777228.

Seedling, 57h light, rep1, sRNA-seq

Organism:: Arabidopsis thaliana

Source name:: Seedlings

Platform:: GPL19580
Series:: GSE250329 GSE250331

Download data: BEDGRAPH

Sample

Accession:: GSM7977722

ID:: 307977722

SRA Run Selector

Select item 3079777219.

Germinating seed, 26h light, rep2, sRNA-seq

Organism:: Arabidopsis thaliana

Source name:: Seeds

Platform:: GPL19580
Series:: GSE250329 GSE250331

Sample

Accession:: GSM7977721

ID:: 307977721

SRA Run Selector

Select item 30797772010.

Germinating seed, 26h light, rep1, sRNA-seq

Organism:: Arabidopsis thaliana

Source name:: Seeds

Platform:: GPL19580
Series:: GSE250329 GSE250331

Download data: BEDGRAPH

Sample

Accession:: GSM7977720

ID:: 307977720

SRA Run Selector

Select item 30797771911.

Germinating seed, 6h light, rep2, sRNA-seq

Organism:: Arabidopsis thaliana

Source name:: Seeds

Platform:: GPL19580
Series:: GSE250329 GSE250331

Sample

Accession:: GSM7977719

ID:: 307977719

SRA Run Selector

Select item 30797771812.

Germinating seed, 6h light, rep1, sRNA-seq

Organism:: Arabidopsis thaliana

Source name:: Seeds

Platform:: GPL19580
Series:: GSE250329 GSE250331

Download data: BEDGRAPH

Sample

Accession:: GSM7977718

ID:: 307977718

SRA Run Selector

Select item 30797771713.

Germinating seed, 72h stratification, rep2, sRNA-seq

Organism:: Arabidopsis thaliana

Source name:: Seeds

Platform:: GPL19580
Series:: GSE250329 GSE250331

Sample

Accession:: GSM7977717

ID:: 307977717

SRA Run Selector

Select item 30797771614.

Germinating seed, 72h stratification, rep1, sRNA-seq

Organism:: Arabidopsis thaliana

Source name:: Seeds

Platform:: GPL19580
Series:: GSE250329 GSE250331

Download data: BEDGRAPH

Sample

Accession:: GSM7977716

ID:: 307977716

SRA Run Selector

Select item 30797771515.

Germinating seed, 24h stratification, rep2, sRNA-seq

Organism:: Arabidopsis thaliana

Source name:: Seeds

Platform:: GPL19580
Series:: GSE250329 GSE250331

Sample

Accession:: GSM7977715

ID:: 307977715

SRA Run Selector

Select item 30797771416.

Germinating seed, 24h stratification, rep1, sRNA-seq

Organism:: Arabidopsis thaliana

Source name:: Seeds

Platform:: GPL19580
Series:: GSE250329 GSE250331

Download data: BEDGRAPH

Sample

Accession:: GSM7977714

ID:: 307977714

SRA Run Selector

Select item 30797771317.

Dry seed, rep2, sRNA-seq

Organism:: Arabidopsis thaliana

Source name:: Seeds

Platform:: GPL19580
Series:: GSE250329 GSE250331

Sample

Accession:: GSM7977713

ID:: 307977713

SRA Run Selector

Select item 30797771218.

Dry seed, rep1, sRNA-seq

Organism:: Arabidopsis thaliana

Source name:: Seeds

Platform:: GPL19580
Series:: GSE250329 GSE250331

Download data: BEDGRAPH

Sample

Accession:: GSM7977712

ID:: 307977712

SRA Run Selector

Select item 30797771119.

rrp4-2, 57h light, rep2, csRNA-seq

Organism:: Arabidopsis thaliana

Source name:: Seedlings

Platform:: GPL19580
Series:: GSE250329 GSE250331

Sample

Accession:: GSM7977711

ID:: 307977711

SRA Run Selector

Select item 30797771020.

rrp4-2, 57h light, rep1, csRNA-seq

Organism:: Arabidopsis thaliana

Source name:: Seedlings

Platform:: GPL19580
Series:: GSE250329 GSE250331

Download data: BW

Sample

Accession:: GSM7977710

ID:: 307977710

SRA Run Selector

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GSE250329[Accession] (34)
GEO DataSets
PREDICTED: Homo sapiens RAB21, member RAS oncogene family (RAB21), transcript va...
PREDICTED: Homo sapiens RAB21, member RAS oncogene family (RAB21), transcript variant X1, mRNA
gi|2462530732|ref|XM_054371463.1|

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