GSE34326[Accession] - GEO DataSets - NCBI

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Items: 11

Select item 2000343261.

Transcriptome analysis reveals strain-specific and conserved stemness genes in Schmidtea mediterranea

(Submitter supplied) The transcriptome of the planarian Schmidtea mediterranea is not well characterized. We have used RNA-Seq to characterize the transcriptome in both sexual and asexual strains of S. mediterranea from both untreated and irradiated animals. Moreover, we have performed RNA-Seq on RNA purified from FACS sorted neoblasts and differentiated cells. Together these studies expand our understanding of the planarian transcriptome and have identified strain-specific, neoblast-specific, and conserved transcripts.

Organism:: Schmidtea mediterranea

Type:: Expression profiling by high throughput sequencing

Platform:: GPL14991
9 Samples

Download data: BEDGRAPH, SAM

Series

Accession:: GSE34326

ID:: 200034326

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000149912.

Illumina Genome Analyzer IIx (Schmidtea mediterranea)

Organism:: Schmidtea mediterranea

2 Series
11 Samples

Platform

Accession:: GPL14991

ID:: 100014991

Select item 3008474693.

Sexual Non-irradiated, X2 FACS purified neoblast

Organism:: Schmidtea mediterranea

Source name:: Sexual strain of S. mediterranea, Non-irradiated, X2 FACS purified neoblast

Platform:: GPL14991
Series:: GSE34326

Download data: BEDGRAPH, SAM

Sample

Accession:: GSM847469

ID:: 300847469

SRA Run Selector

Select item 3008474684.

Sexual Non-irradiated, Xins FACS purified differentiated cells

Organism:: Schmidtea mediterranea

Source name:: Sexual strain of S. mediterranea, Non-irradiated, Xins FACS purified differentiated cells

Platform:: GPL14991
Series:: GSE34326

Download data: BEDGRAPH, SAM

Sample

Accession:: GSM847468

ID:: 300847468

SRA Run Selector

Select item 3008474675.

Sexual Non-irradiated, X1 FACS purified neoblast

Organism:: Schmidtea mediterranea

Source name:: Sexual strain of S. mediterranea, Non-irradiated, X1 FACS purified neoblast

Platform:: GPL14991
Series:: GSE34326

Download data: BEDGRAPH, SAM

Sample

Accession:: GSM847467

ID:: 300847467

SRA Run Selector

Select item 3008474666.

Sexual Non-irradiated [paired end]

Organism:: Schmidtea mediterranea

Source name:: Sexual strain of S. mediterranea, Non-irradiated

Platform:: GPL14991
Series:: GSE34326

Sample

Accession:: GSM847466

ID:: 300847466

SRA Run Selector

Select item 3008474657.

Sexual Non-irradiated [single end]

Organism:: Schmidtea mediterranea

Source name:: Sexual strain of S. mediterranea, Non-irradiated

Platform:: GPL14991
Series:: GSE34326

Download data: BEDGRAPH, SAM

Sample

Accession:: GSM847465

ID:: 300847465

SRA Run Selector

Select item 3008474648.

Sexual Irradiated

Organism:: Schmidtea mediterranea

Source name:: Sexual strain of S. mediterranea, Irradiated

Platform:: GPL14991
Series:: GSE34326

Download data: BEDGRAPH, SAM

Sample

Accession:: GSM847464

ID:: 300847464

SRA Run Selector

Select item 3008474639.

Asexual Non-irradiated [paired end]

Organism:: Schmidtea mediterranea

Source name:: Asexual strain of S. mediterranea, Non-irradiated

Platform:: GPL14991
Series:: GSE34326

Sample

Accession:: GSM847463

ID:: 300847463

SRA Run Selector

Select item 30084746210.

Asexual Non-irradiated [single end]

Organism:: Schmidtea mediterranea

Source name:: Asexual strain of S. mediterranea, Non-irradiated

Platform:: GPL14991
Series:: GSE34326

Download data: BEDGRAPH, SAM

Sample

Accession:: GSM847462

ID:: 300847462

SRA Run Selector

Select item 30084746111.

Asexual Irradiated

Organism:: Schmidtea mediterranea

Source name:: Asexual strain of S. mediterranea, Irradiated

Platform:: GPL14991
Series:: GSE34326

Download data: BEDGRAPH, SAM

Sample

Accession:: GSM847461

ID:: 300847461

SRA Run Selector

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GSE34326[Accession] (11)
GEO DataSets
Schizosaccharomyces pombe ribosome export GTPase (nog2), mRNA
Schizosaccharomyces pombe ribosome export GTPase (nog2), mRNA
gi|2745689578|ref|NM_001019326.3|

Nucleotide
Lactobacillus kunkeei strain H20_5_2SCO2 16S ribosomal RNA gene, partial sequenc...
Lactobacillus kunkeei strain H20_5_2SCO2 16S ribosomal RNA gene, partial sequence
gi|585283520|gb|KF599485.1|

Nucleotide
Lactobacillus kunkeei strain H20_5_1SCO2 16S ribosomal RNA gene, partial sequenc...
Lactobacillus kunkeei strain H20_5_1SCO2 16S ribosomal RNA gene, partial sequence
gi|585283519|gb|KF599484.1|

Nucleotide
etf2 electron transfer flavoprotein alpha subunit [Schizosaccharomyces pombe]
etf2 electron transfer flavoprotein alpha subunit [Schizosaccharomyces pombe]
Gene ID:2542385

Gene

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