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Items: 13

1.

The nucleosomal barrier to promoter escape by RNA Polymerase II is overcome by the chromatin remodeler Chd1 [HiSeq]

(Submitter supplied) We use a metabolic labeling strategy for directly measuring nucleosome turnover to determine the role of chromatin remodeler Chd1 on chromatin dynamics in mouse embryonic fibroblasts expressing with wildtype-Chd1 and dominant negative K510R-Chd1. We find that expression of K5 10R-Chd1 decreases nucleosome turnover at the promoter and increases turnover within the gene body.
Organism:
Mus musculus
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platforms:
GPL13112 GPL17021
10 Samples
Download data: BED, BEDGRAPH
Series
Accession:
GSE52501
ID:
200052501

PubMed Full text in PMC Similar studies SRA Run Selector

2.

Illumina HiSeq 2500 (Mus musculus)

Organism:
Mus musculus
11075 Series
298785 Samples
Download data
Platform
Accession:
GPL17021
ID:
100017021

3.

Illumina HiSeq 2000 (Mus musculus)

Organism:
Mus musculus
8334 Series
188543 Samples
Download data
Platform
Accession:
GPL13112
ID:
100013112

4.

wt_MEFs_Ser2_ChIP_(20130118_7_6)

Organism:
Mus musculus
Source name:
wildtype-Chd1 MEFs Ser2 ChIP_seq
Platform:
GPL13112
Series:
GSE52349 GSE52501
Download data: BED, BEDGRAPH
Sample
Accession:
GSM1267953
ID:
301267953

SRA Run Selector

5.

wt_MEFs_N20_ChIP_(20120817_5_4)

Organism:
Mus musculus
Source name:
wildtype-Chd1 MEFs N20 ChIP_seq
Platform:
GPL13112
Series:
GSE52349 GSE52501
Download data: BED, BEDGRAPH
Sample
Accession:
GSM1267952
ID:
301267952

SRA Run Selector

6.

wt_MEFs_MNase_(20120817_4_6)

Organism:
Mus musculus
Source name:
wildtype-Chd1 MNase digested chromatin
Platform:
GPL13112
Series:
GSE52349 GSE52501
Download data: BED, BEDGRAPH
Sample
Accession:
GSM1267951
ID:
301267951

SRA Run Selector

7.

wt_MEFs_FLAG_ChIP_(20120817_6_4)

Organism:
Mus musculus
Source name:
wildtype-Chd1 MEFs FLAG ChIP_seq
Platform:
GPL13112
Series:
GSE52349 GSE52501
Download data: BED, BEDGRAPH
Sample
Accession:
GSM1267950
ID:
301267950

SRA Run Selector

8.

K510R_MEFs_Ser2_ChIP_(20130118_7_12)

Organism:
Mus musculus
Source name:
K510R-Chd1 MEFs Ser2 ChIP_seq
Platform:
GPL13112
Series:
GSE52349 GSE52501
Download data: BED, BEDGRAPH
Sample
Accession:
GSM1267947
ID:
301267947

SRA Run Selector

9.

K510R_MEFs_N20_ChIP_(20120817_5_6)

Organism:
Mus musculus
Source name:
K510R-Chd1 MEFs N20 ChIP_seq
Platform:
GPL13112
Series:
GSE52349 GSE52501
Download data: BED, BEDGRAPH
Sample
Accession:
GSM1267946
ID:
301267946

SRA Run Selector

10.

K510R_MEFs_MNase_(20120817_4_12)

Organism:
Mus musculus
Source name:
K510R-Chd1 MNase digested chromatin
Platform:
GPL13112
Series:
GSE52349 GSE52501
Download data: BED, BEDGRAPH
Sample
Accession:
GSM1267945
ID:
301267945

SRA Run Selector

11.

K510R_MEFs_FLAG_ChIP_(20120817_6_12)

Organism:
Mus musculus
Source name:
K510R-Chd1 MEFs FLAG ChIP_seq
Platform:
GPL13112
Series:
GSE52349 GSE52501
Download data: BED, BEDGRAPH
Sample
Accession:
GSM1267944
ID:
301267944

SRA Run Selector

12.

control_MEFs_MNase_(20130520_1,2_6)

Organism:
Mus musculus
Source name:
control-Chd1 MNase digested chromatin
Platform:
GPL17021
Series:
GSE52349 GSE52501
Download data: BED, BEDGRAPH
Sample
Accession:
GSM1267949
ID:
301267949

SRA Run Selector

13.

KD_MEFs_MNase_(20130520_1,2_12)

Organism:
Mus musculus
Source name:
control-Chd1 MNase digested chromatin
Platform:
GPL17021
Series:
GSE52349 GSE52501
Download data: BED, BEDGRAPH
Sample
Accession:
GSM1267948
ID:
301267948

SRA Run Selector

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