GSE54379[Accession] - GEO DataSets - NCBI

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Select item 2000543791.

Genome-wide chromatin maps of T-cell acute lymphoblastic leukemia (T-ALL) [ChIP-seq]

(Submitter supplied) Here we modeled T-ALL resistance to Notch inhibition, identifying ‘persister’ cells that readily expand in the presence of gamma secretase inhibitor (GSI) and the absence of Notch signaling. Rare persister cells are already present in naïve T-ALL populations, and the reversibility of the phenotype is suggestive of an epigenetic mechanism. Relative to GSI-sensitive cells, persisters activate distinct signaling and gene expression programs, and exhibit global chromatin compaction. more...

Organism:: Homo sapiens

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL11154
28 Samples

Download data: BW

Series

Accession:: GSE54379

ID:: 200054379

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000111542.

Illumina HiSeq 2000 (Homo sapiens)

Organism:: Homo sapiens

10547 Series
183607 Samples

Platform

Accession:: GPL11154

ID:: 100011154

Select item 3013141483.

Whole Cell Extracts in DND-41 persisters

Organism:: Homo sapiens

Source name:: DND-41 persister cells

Platform:: GPL11154
Series:: GSE54379 GSE54380

Download data: BW

Sample

Accession:: GSM1314148

ID:: 301314148

SRA Run Selector

Select item 3013141474.

H3K4me3 ChIP-seq in DND-41 persisters

Organism:: Homo sapiens

Source name:: DND-41 persister cells

Platform:: GPL11154
Series:: GSE54379 GSE54380

Download data: BW

Sample

Accession:: GSM1314147

ID:: 301314147

SRA Run Selector

Select item 3013141465.

H3K4me1 ChIP-seq in DND-41 persisters

Organism:: Homo sapiens

Source name:: DND-41 persister cells

Platform:: GPL11154
Series:: GSE54379 GSE54380

Download data: BW

Sample

Accession:: GSM1314146

ID:: 301314146

SRA Run Selector

Select item 3013141456.

H3K36me3 ChIP-seq in DND-41 persisters

Organism:: Homo sapiens

Source name:: DND-41 persister cells

Platform:: GPL11154
Series:: GSE54379 GSE54380

Download data: BW

Sample

Accession:: GSM1314145

ID:: 301314145

SRA Run Selector

Select item 3013141447.

H3K27me3 ChIP-seq in DND-41 persisters

Organism:: Homo sapiens

Source name:: DND-41 persister cells

Platform:: GPL11154
Series:: GSE54379 GSE54380

Download data: BW

Sample

Accession:: GSM1314144

ID:: 301314144

SRA Run Selector

Select item 3013141438.

H3K27ac ChIP-seq in DND-41 persisters

Organism:: Homo sapiens

Source name:: DND-41 persister cells

Platform:: GPL11154
Series:: GSE54379 GSE54380

Download data: BW

Sample

Accession:: GSM1314143

ID:: 301314143

SRA Run Selector

Select item 3013141429.

BRD4 ChIP-seq in DND-41 persisters

Organism:: Homo sapiens

Source name:: DND-41 persister cells

Platform:: GPL11154
Series:: GSE54379 GSE54380

Download data: BW

Sample

Accession:: GSM1314142

ID:: 301314142

SRA Run Selector

Select item 30131414110.

Whole Cell Extracts in DND-41

Organism:: Homo sapiens

Source name:: DND-41 naïve cells

Platform:: GPL11154
Series:: GSE54379 GSE54380

Download data: BW

Sample

Accession:: GSM1314141

ID:: 301314141

SRA Run Selector

Select item 30131414011.

H3K4me3 ChIP-seq in DND-41

Organism:: Homo sapiens

Source name:: DND-41 naïve cells

Platform:: GPL11154
Series:: GSE54379 GSE54380

Download data: BW

Sample

Accession:: GSM1314140

ID:: 301314140

SRA Run Selector

Select item 30131413912.

H3K4me1 ChIP-seq in DND-41

Organism:: Homo sapiens

Source name:: DND-41 naïve cells

Platform:: GPL11154
Series:: GSE54379 GSE54380

Download data: BW

Sample

Accession:: GSM1314139

ID:: 301314139

SRA Run Selector

Select item 30131413813.

H3K36me3 ChIP-seq in DND-41

Organism:: Homo sapiens

Source name:: DND-41 naïve cells

Platform:: GPL11154
Series:: GSE54379 GSE54380

Download data: BW

Sample

Accession:: GSM1314138

ID:: 301314138

SRA Run Selector

Select item 30131413714.

H3K27me3 ChIP-seq in DND-41

Organism:: Homo sapiens

Source name:: DND-41 naïve cells

Platform:: GPL11154
Series:: GSE54379 GSE54380

Download data: BW

Sample

Accession:: GSM1314137

ID:: 301314137

SRA Run Selector

Select item 30131413615.

H3K27ac ChIP-seq in DND-41

Organism:: Homo sapiens

Source name:: DND-41 naïve cells

Platform:: GPL11154
Series:: GSE54379 GSE54380

Download data: BW

Sample

Accession:: GSM1314136

ID:: 301314136

SRA Run Selector

Select item 30131413516.

BRD4 ChIP-seq in DND-41

Organism:: Homo sapiens

Source name:: DND-41 naïve cells

Platform:: GPL11154
Series:: GSE54379 GSE54380

Download data: BW

Sample

Accession:: GSM1314135

ID:: 301314135

SRA Run Selector

Select item 30131413417.

Whole Cell Extracts in KOPT-K1 persisters

Organism:: Homo sapiens

Source name:: KOPT-K1 persister cells

Platform:: GPL11154
Series:: GSE54379 GSE54380

Download data: BW

Sample

Accession:: GSM1314134

ID:: 301314134

SRA Run Selector

Select item 30131413318.

H3K4me3 ChIP-seq in KOPT-K1 persisters

Organism:: Homo sapiens

Source name:: KOPT-K1 persister cells

Platform:: GPL11154
Series:: GSE54379 GSE54380

Download data: BW

Sample

Accession:: GSM1314133

ID:: 301314133

SRA Run Selector

Select item 30131413219.

H3K4me1 ChIP-seq in KOPT-K1 persisters

Organism:: Homo sapiens

Source name:: KOPT-K1 persister cells

Platform:: GPL11154
Series:: GSE54379 GSE54380

Download data: BW

Sample

Accession:: GSM1314132

ID:: 301314132

SRA Run Selector

Select item 30131413120.

H3K36me3 ChIP-seq in KOPT-K1 persisters

Organism:: Homo sapiens

Source name:: KOPT-K1 persister cells

Platform:: GPL11154
Series:: GSE54379 GSE54380

Download data: BW

Sample

Accession:: GSM1314131

ID:: 301314131

SRA Run Selector

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GSE54379[Accession] (30)
GEO DataSets
Uropsilus nivatus isolate Uropgr_2 cAMP responsive element moderator (CREM) gene...
Uropsilus nivatus isolate Uropgr_2 cAMP responsive element moderator (CREM) gene, partial cds
gi|1104679074|gb|KX754730.1|

Nucleotide
Persicitalea jodogahamensis strain KCTC 12866 platanus_K_default_1, whole genome...
Persicitalea jodogahamensis strain KCTC 12866 platanus_K_default_1, whole genome shotgun sequence
gi|2815503461|ref|NZ_JBHMDR01000000 gnl|WGS:NZ_JBHMDR01|platanus_K_default_1

Nucleotide
Persicitalea jodogahamensis strain KCTC 12866 platanus_K_default_10, whole genom...
Persicitalea jodogahamensis strain KCTC 12866 platanus_K_default_10, whole genome shotgun sequence
gi|2815503705|ref|NZ_JBHMDR01000000 gnl|WGS:NZ_JBHMDR01|platanus_K_default_10

Nucleotide
Bacillus subtilis strain PS-13 Bacillus_13_000000000035, whole genome shotgun se...
Bacillus subtilis strain PS-13 Bacillus_13_000000000035, whole genome shotgun sequence
gi|2036123078|ref|NZ_VBRL01000035.1 |WGS:NZ_VBRL01|Bacillus_13_000000000035

Nucleotide

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