GSE54728[Accession] - GEO DataSets

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Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Arabidopsis lyrata; Arabidopsis thaliana; Arabis alpina

Type:: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing

Platforms:: GPL11221 GPL16940 GPL18238
30 Samples

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Series

Accession:: GSE54728

ID:: 200054728

Select item 1000182382.

Illumina Genome Analyzer IIx (Arabis alpina)

Organism:: Arabis alpina

2 Series
12 Samples

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Platform

Accession:: GPL18238

ID:: 100018238

Select item 1000169403.

Illumina Genome Analyzer IIx (Arabidopsis lyrata)

Organism:: Arabidopsis lyrata

4 Series
14 Samples

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Platform

Accession:: GPL16940

ID:: 100016940

Select item 1000112214.

Illumina Genome Analyzer IIx (Arabidopsis thaliana)

Organism:: Arabidopsis thaliana

108 Series
2759 Samples

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Platform

Accession:: GPL11221

ID:: 100011221

Select item 3013228905.

Al_mRNA_rep1

Organism:: Arabidopsis lyrata

Source name:: young leaves

Platform:: GPL16940
Series:: GSE54727 GSE54728

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Sample

Accession:: GSM1322890

ID:: 301322890

SRA Run Selector

Select item 3013228896.

Al_INPUT-MeDIP_rep2

Organism:: Arabidopsis lyrata

Source name:: young leaves

Platform:: GPL16940
Series:: GSE54727 GSE54728

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Sample

Accession:: GSM1322889

ID:: 301322889

SRA Run Selector

Select item 3013228887.

Al_INPUT-MeDIP_rep1

Organism:: Arabidopsis lyrata

Source name:: young leaves

Platform:: GPL16940
Series:: GSE54727 GSE54728

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Sample

Accession:: GSM1322888

ID:: 301322888

SRA Run Selector

Select item 3013228878.

Al_MeDIP_rep2

Organism:: Arabidopsis lyrata

Source name:: young leaves

Platform:: GPL16940
Series:: GSE54727 GSE54728

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Sample

Accession:: GSM1322887

ID:: 301322887

SRA Run Selector

Select item 3013228869.

Al_MeDIP_rep1

Organism:: Arabidopsis lyrata

Source name:: young leaves

Platform:: GPL16940
Series:: GSE54727 GSE54728

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Sample

Accession:: GSM1322886

ID:: 301322886

SRA Run Selector

Select item 30132288510.

Al_INPUT-ChIP_rep1

Organism:: Arabidopsis lyrata

Source name:: young leaves

Platform:: GPL16940
Series:: GSE54727 GSE54728

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Sample

Accession:: GSM1322885

ID:: 301322885

SRA Run Selector

Select item 30132288411.

Al_H3K27me1_rep2

Organism:: Arabidopsis lyrata

Source name:: young leaves

Platform:: GPL16940
Series:: GSE54727 GSE54728

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Sample

Accession:: GSM1322884

ID:: 301322884

SRA Run Selector

Select item 30132288312.

Al_H3K27me1_rep1

Organism:: Arabidopsis lyrata

Source name:: young leaves

Platform:: GPL16940
Series:: GSE54727 GSE54728

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Sample

Accession:: GSM1322883

ID:: 301322883

SRA Run Selector

Select item 30132288213.

Al_H3K27me3_rep2

Organism:: Arabidopsis lyrata

Source name:: young leaves

Platform:: GPL16940
Series:: GSE54727 GSE54728

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Sample

Accession:: GSM1322882

ID:: 301322882

SRA Run Selector

Select item 30132288114.

Al_H3K27me3_rep1

Organism:: Arabidopsis lyrata

Source name:: young leaves

Platform:: GPL16940
Series:: GSE54727 GSE54728

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Sample

Accession:: GSM1322881

ID:: 301322881

SRA Run Selector

Select item 30132288015.

Al_H3K4me3_rep2

Organism:: Arabidopsis lyrata

Source name:: young leaves

Platform:: GPL16940
Series:: GSE54727 GSE54728

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Sample

Accession:: GSM1322880

ID:: 301322880

SRA Run Selector

Select item 30132287916.

Al_H3K4me3_rep1

Organism:: Arabidopsis lyrata

Source name:: young leaves

Platform:: GPL16940
Series:: GSE54727 GSE54728

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Sample

Accession:: GSM1322879

ID:: 301322879

SRA Run Selector

Select item 30132680017.

At_INPUT-MeDIP_rep2

Organism:: Arabidopsis thaliana

Source name:: young leaves

Platform:: GPL11221
Series:: GSE54728 GSE54894

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Sample

Accession:: GSM1326800

ID:: 301326800

SRA Run Selector

Select item 30132679918.

At_INPUT-MeDIP_rep1

Organism:: Arabidopsis thaliana

Source name:: young leaves

Platform:: GPL11221
Series:: GSE54728 GSE54894

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Sample

Accession:: GSM1326799

ID:: 301326799

SRA Run Selector

Select item 30132679819.

At_MeDIP_rep2

Organism:: Arabidopsis thaliana

Source name:: young leaves

Platform:: GPL11221
Series:: GSE54728 GSE54894

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Sample

Accession:: GSM1326798

ID:: 301326798

SRA Run Selector

Select item 30132679720.

At_MeDIP_rep1

Organism:: Arabidopsis thaliana

Source name:: young leaves

Platform:: GPL11221
Series:: GSE54728 GSE54894

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Sample

Accession:: GSM1326797

ID:: 301326797

SRA Run Selector

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