GSE56922[Accession] - GEO DataSets - NCBI

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Select item 2000569221.

Global variation of gene expression induced by constitutive activation of the NIK receptor in Arabidopsis

(Submitter supplied) Arabidopsis was transformed with the NIK receptor or the mutant T474D NIK receptor and infected with CaLCuV. The global variation of gene expression was analysed by RNA-seq at 10 days post inoculation and 20 days post inoculation and differential gene expression was determinated in comparison with mock inoculated Arabidopsis lines.

Organism:: Arabidopsis thaliana

Type:: Expression profiling by high throughput sequencing

Platform:: GPL13222
20 Samples

Download data: CSV

Series

Accession:: GSE56922

ID:: 200056922

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000132222.

Illumina HiSeq 2000 (Arabidopsis thaliana)

Organism:: Arabidopsis thaliana

781 Series
11076 Samples

Platform

Accession:: GPL13222

ID:: 100013222

Select item 3013713703.

infected T474D 20 days rep 2

Organism:: Arabidopsis thaliana

Source name:: T474D_infected20

Platform:: GPL13222
Series:: GSE56922

Sample

Accession:: GSM1371370

ID:: 301371370

SRA Run Selector

Select item 3013713694.

infected T474D 20 days rep 1

Organism:: Arabidopsis thaliana

Source name:: T474D_infected20

Platform:: GPL13222
Series:: GSE56922

Sample

Accession:: GSM1371369

ID:: 301371369

SRA Run Selector

Select item 3013713685.

mock T474D 20 days rep 2

Organism:: Arabidopsis thaliana

Source name:: T474D_mock20

Platform:: GPL13222
Series:: GSE56922

Sample

Accession:: GSM1371368

ID:: 301371368

SRA Run Selector

Select item 3013713676.

mock T474D 20 days rep 1

Organism:: Arabidopsis thaliana

Source name:: T474D_mock20

Platform:: GPL13222
Series:: GSE56922

Sample

Accession:: GSM1371367

ID:: 301371367

SRA Run Selector

Select item 3013713667.

infected Col0 20 days rep 2

Organism:: Arabidopsis thaliana

Source name:: WT_infected20

Platform:: GPL13222
Series:: GSE56922

Sample

Accession:: GSM1371366

ID:: 301371366

SRA Run Selector

Select item 3013713658.

infected Col0 20 days rep 1

Organism:: Arabidopsis thaliana

Source name:: WT_infected20

Platform:: GPL13222
Series:: GSE56922

Sample

Accession:: GSM1371365

ID:: 301371365

SRA Run Selector

Select item 3013713649.

mock Col0 20 days rep 2

Organism:: Arabidopsis thaliana

Source name:: WT_mock20

Platform:: GPL13222
Series:: GSE56922

Sample

Accession:: GSM1371364

ID:: 301371364

SRA Run Selector

Select item 30137136310.

mock Col0 20 days rep 1

Organism:: Arabidopsis thaliana

Source name:: WT_mock20

Platform:: GPL13222
Series:: GSE56922

Sample

Accession:: GSM1371363

ID:: 301371363

SRA Run Selector

Select item 30137136211.

infected T474D 10 days rep 2

Organism:: Arabidopsis thaliana

Source name:: T474D_infected10

Platform:: GPL13222
Series:: GSE56922

Sample

Accession:: GSM1371362

ID:: 301371362

SRA Run Selector

Select item 30137136112.

infected T474D 10 days rep 1

Organism:: Arabidopsis thaliana

Source name:: T474D_infected10

Platform:: GPL13222
Series:: GSE56922

Sample

Accession:: GSM1371361

ID:: 301371361

SRA Run Selector

Select item 30137136013.

mock T474D 10 days rep 2

Organism:: Arabidopsis thaliana

Source name:: T474D_mock10

Platform:: GPL13222
Series:: GSE56922

Sample

Accession:: GSM1371360

ID:: 301371360

SRA Run Selector

Select item 30137135914.

mock T474D 10 days rep 1

Organism:: Arabidopsis thaliana

Source name:: T474D_mock10

Platform:: GPL13222
Series:: GSE56922

Sample

Accession:: GSM1371359

ID:: 301371359

SRA Run Selector

Select item 30137135815.

infected NIK 10 days rep 2

Organism:: Arabidopsis thaliana

Source name:: NIK_infected10

Platform:: GPL13222
Series:: GSE56922

Sample

Accession:: GSM1371358

ID:: 301371358

SRA Run Selector

Select item 30137135716.

infected NIK 10 days rep 1

Organism:: Arabidopsis thaliana

Source name:: NIK_infected10

Platform:: GPL13222
Series:: GSE56922

Sample

Accession:: GSM1371357

ID:: 301371357

SRA Run Selector

Select item 30137135617.

mock NIK 10 days rep 2

Organism:: Arabidopsis thaliana

Source name:: NIK_mock10

Platform:: GPL13222
Series:: GSE56922

Sample

Accession:: GSM1371356

ID:: 301371356

SRA Run Selector

Select item 30137135518.

mock NIK 10 days rep 1

Organism:: Arabidopsis thaliana

Source name:: NIK_mock10

Platform:: GPL13222
Series:: GSE56922

Sample

Accession:: GSM1371355

ID:: 301371355

SRA Run Selector

Select item 30137135419.

infected Col0 10 days rep 2

Organism:: Arabidopsis thaliana

Source name:: WT_infected10

Platform:: GPL13222
Series:: GSE56922

Sample

Accession:: GSM1371354

ID:: 301371354

SRA Run Selector

Select item 30137135320.

infected Col0 10 days rep 1

Organism:: Arabidopsis thaliana

Source name:: WT_infected10

Platform:: GPL13222
Series:: GSE56922

Sample

Accession:: GSM1371353

ID:: 301371353

SRA Run Selector

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