GSM1184978[Accession] - GEO DataSets

Select item 2000488091.

The metabolic niche of a prominent sulfate-reducing human gut bacterium

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Marvinbryantia formatexigens DSM 14469; Mus musculus; [Clostridium] symbiosum; Bacteroides ovatus ATCC 8483; Desulfovibrio piger GOR1; Bacteroides thetaiotaomicron VPI-5482; Bacteroides caccae ATCC 43185; Collinsella aerofaciens ATCC 25986; Escherichia coli str. K-12 substr. MG1655; Agathobacter rectalis ATCC 33656

Type:: Expression profiling by high throughput sequencing; Other

7 related Platforms
135 Samples

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Series

Accession:: GSE48809

ID:: 200048809

PubMed Full text in PMC Similar studies

Select item 2000488072.

The metabolic niche of a prominent sulfate-reducing human gut bacterium [2]

(Submitter supplied) Sulfate-reducing bacteria (SRB) colonize the guts of ~50% of humans and produce H2S, a signaling molecule with numerous host effects. We used genome-wide transposon mutagenesis and insertion-site sequencing (INSeq), RNA-Seq, plus mass spectrometry to characterize genetic and environmental factors that impact the niche of Desulfovibrio piger, the most common SRB in a surveyed cohort of healthy USA adults. more...

Organism:: Marvinbryantia formatexigens DSM 14469; Escherichia coli str. K-12 substr. MG1655; Collinsella aerofaciens ATCC 25986; [Clostridium] symbiosum; Bacteroides thetaiotaomicron VPI-5482; Bacteroides ovatus ATCC 8483; Bacteroides caccae ATCC 43185; Agathobacter rectalis ATCC 33656; Desulfovibrio piger GOR1

Type:: Other

6 related Platforms
114 Samples

Download data: TXT

Series

Accession:: GSE48807

ID:: 200048807

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000173833.

Illumina Genome Analyzer IIx (Bacteroides caccae ATCC 43185; Bacteroides ovatus ATCC 8483; Bacteroides thetaiotaomicron VPI-5482; Clostridium symbiosum; Collinsella aerofaciens ATCC 25986; Desulfovibrio piger GOR1; Escherichia coli str. K-12 substr. MG1655; Eubacterium rectale ATCC 33656; Marvinbryantia formatexigens DSM 14469)

Organism:: [Clostridium] symbiosum; Bacteroides thetaiotaomicron VPI-5482; Bacteroides ovatus ATCC 8483; Bacteroides caccae ATCC 43185; Collinsella aerofaciens ATCC 25986; Marvinbryantia formatexigens DSM 14469; Escherichia coli str. K-12 substr. MG1655; Agathobacter rectalis ATCC 33656; Desulfovibrio piger GOR1

3 Series
75 Samples

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Platform

Accession:: GPL17383

ID:: 100017383

Select item 3011849784.

M12_091411

Organism:: Marvinbryantia formatexigens DSM 14469; [Clostridium] symbiosum; Bacteroides thetaiotaomicron VPI-5482; Bacteroides ovatus ATCC 8483; Bacteroides caccae ATCC 43185; Agathobacter rectalis ATCC 33656; Desulfovibrio piger GOR1; Collinsella aerofaciens ATCC 25986; Escherichia coli str. K-12 substr. MG1655

Source name:: Defined bacterial assemblage from the feces of a gnotobiotic mouse

Platform:: GPL17383
Series:: GSE48807 GSE48809

Download data: TXT

Sample

Accession:: GSM1184978

ID:: 301184978

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