GEO DataSets

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Gallus gallus

Type:

Genome variation profiling by genome tiling array

Platforms:

GPL18174 GPL18175

11 Samples

Download data: PAIR, TXT

(Submitter supplied) Copy number variation (CNV) is important and widespread in the genome, and is a major cause of disease and phenotypic diversity. Herein, we perform a genome-wide analysis of CNVs in the 12 diversified chicken genomes based on next-generation sequencing. We apply aCGH experiments to confirm our predicted CNVs. Results from aCGH agree well with our findings and the Pearson’s correlation values between the test and reference samples range from 0.395 to 0.740.

Organism:

Gallus gallus

Type:

Genome variation profiling by genome tiling array

Platform:

GPL18174

8 Samples

Download data: PAIR

(Submitter supplied) galGal4 A NimbleGen custom-designed 3*1.4M array based on galGal4 2011 build used in our experiment, which contained a total of 1425178 50-75mer probes with a mean and median interval of 734bp and 700bp. 120717_GalGal4_JH_CGH.ndf 120717_GalGal4_JH_CGH.pos Protocol: NimbleGen

Organism:

Gallus gallus

2 Series

8 Samples

Download data: NDF, POS