GEO DataSets

(Submitter supplied) The purpose of this study is to investigate the changes of global gene expression in E. coli during an oxygen shift. All cultures were grown under aerobic or anaerobic conditions in M9 minimal media supplemented with glucose. Samples were RNA-stabilized using Qiagen RNAProtect Bacterial Reagent, and total RNA was isolated from exponentially growing cells using a Qiagen RNeasy mini kit (protocols available at www1.qiagen.com). more...

Organism:

Escherichia coli; Escherichia coli K-12

Type:

Expression profiling by array

Dataset:

GDS680

Platform:

GPL199

43 Samples

Download data: CEL

(Submitter supplied) Six different knock-out strains' expression data under aerobic condition Keywords: parallel sample

Organism:

Escherichia coli; Escherichia coli K-12

Type:

Expression profiling by array

Platform:

GPL199

21 Samples

Download data: CEL

Examination of K-12 MG1655 deletion strains grown in either aerobic or anaerobic conditions. Strains deleted for transcriptional regulators in oxygen response. Results used to validate a computational model of transcriptional and metabolic networks.

Organism:

Escherichia coli; Escherichia coli K-12

Type:

Expression profiling by array, count, 7 genotype/variation, 2 growth protocol, 2 strain sets

Platform:

GPL199

Series:

GSE1121

43 Samples

Download data: CEL

(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Has 7312 entries and was indexed 20-May-2002. The GeneChip E. coli Antisense Genome Array can be used for examining expression of all known E. coli genes and discovering novel, uncharacterized intergenic transcripts. The array contains probe sets to detect the antisense strand of more than 4,200 known open reading frames. more...

Organism:

Escherichia coli K-12

6 DataSets

54 Series

1 Related Platform

947 Samples

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