GSM1874144[Accession] - GEO DataSets

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Items: 4

Select item 2000731911.

Chromosomal microarray data for validation of copy-number variants detection from a low-coverage whole-genome sequencing approach in clinical samples

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Homo sapiens

Type:: Genome variation profiling by array; Genome variation profiling by SNP array; SNP genotyping by SNP array

4 related Platforms
72 Samples

Download data: IDAT, TXT

Series

Accession:: GSE73191

ID:: 200073191

Select item 2000728912.

aCGH for CNV detection in clinical samples

(Submitter supplied) In order to evaluate the performance of CNV detection in next-generation sequencing platform in varied sample types, we employed chromosomal microarray analysis (CMA) for validation of the samples with NGS-based detection results (NCBI Sequence Read Archive with accession number SRA296708). Besides snp-array, we used a customized array Comparative Genomics Hybridization (aCGH, Agilent) approach for a cohort of clinical samples including early abortus, induced termination, prenatal samples and postnatal samples. more...

Organism:: Homo sapiens

Type:: Genome variation profiling by array

Platforms:: GPL20897 GPL20898 GPL20899
19 Samples

Download data: TXT

Series

Accession:: GSE72891

ID:: 200072891

Select item 1000208973.

Agilent-022023 Homo sapiens Prenatal Chip V2 [hg19]

(Submitter supplied) PrenatalChipV2 Arrays of this design have barcodes that begin with 16022023 or 2522023. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Probe names. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). more...