GSM2092826[Accession] - GEO DataSets - NCBI

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Items: 4

Select item 2000793551.

Genome-wide analysis of transcription, H2A.Z, nucleosomes and HSF1 dynamics in response to temperature increase in Arabidopsis thaliana

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Arabidopsis thaliana

Type:: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing

Platforms:: GPL17311 GPL19580 GPL13222
108 Samples

Download data: TXT

Series

Accession:: GSE79355

ID:: 200079355

PubMed Full text in PMC Similar studies

Select item 2000793542.

Genome-wide analysis of transcription, H2A.Z, nucleosomes and HSF1 dynamics in response to temperature increase in Arabidopsis thaliana [ChIP-seq & Mnase-seq]

(Submitter supplied) Plants are sessile organisms and therefore must sense and respond to changes of their surrounding conditions such as ambient temperature, which vary diurnally and seasonally. It is not yet clear how plants sense temperature and integrate this information into their development. We have previously shown that H2A.Z-nucleosomes are evicted in response to warmer temperatures. It is not clear however, whether the link between transcriptional responsiveness and changes in H2A.Z binding in context of temperature shifts is a global trend that can be seen throughout the genome, or the phenomenon is specific to a specialised set of temperature-responsive genes. more...

Organism:: Arabidopsis thaliana

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platforms:: GPL13222 GPL19580
65 Samples

Download data: TXT

Series

Accession:: GSE79354

ID:: 200079354

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000195803.

Illumina NextSeq 500 (Arabidopsis thaliana)

Organism:: Arabidopsis thaliana

400 Series
9124 Samples

Platform

Accession:: GPL19580

ID:: 100019580

Select item 3020928264.

H2B_ChIP-seq_27c_1hr

Organism:: Arabidopsis thaliana

Source name:: Col0 WT seedlings

Platform:: GPL19580
Series:: GSE79354 GSE79355

Sample

Accession:: GSM2092826

ID:: 302092826

SRA Run Selector

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GSM2092826[Accession] (4)
GEO DataSets
1302[geneid] (2629)
ClinVar
MAG: Methylococcaceae bacterium isolate F1-140-MAGs138, whole genome shotgun seq...
MAG: Methylococcaceae bacterium isolate F1-140-MAGs138, whole genome shotgun sequencing project
gi|1666021738|gb|SXUF00000000.1|SXU 0000

Nucleotide
cytochrome oxidase subunit 1, partial (mitochondrion) [Centroceras micracanthum]
cytochrome oxidase subunit 1, partial (mitochondrion) [Centroceras micracanthum]
gi|807049820|gb|AKC35315.1|

Protein
Oceanospirillaceae bacterium S-C6 16S ribosomal RNA gene, partial sequence
Oceanospirillaceae bacterium S-C6 16S ribosomal RNA gene, partial sequence
gi|225031316|gb|FJ764031.1|

Nucleotide

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