GEO DataSets

(Submitter supplied) mRNA levels in Wild-type versus ddm1 Arabidopsis thaliana seedlings and bolting plants. Features found to be significantly enriched for DNA methylation were determined. This SuperSeries is composed of the SubSeries listed below.

Organism:

Arabidopsis thaliana

Type:

Expression profiling by genome tiling array

Platform:

GPL785

10 Samples

Download data

(Submitter supplied) The two samples in this series are complementary hybridizations in a dye-swap analysis. Below is the normalized result of the paired dye swap samples EV23 and EV24. The ANOVA model of Kerr, Martin and Churchill (2000) was used to analyze the data from the dye-swap experiments, with terms included to account for gene, dye-by-gene, treatment-by-gene, and random error terms. To account for the number of hypothesis tests being made, and thus provide some level of error rate control, significance was assessed using both family-wise error rate (FWER) and false discovery rate (FDR) controlling methods. more...

Organism:

Arabidopsis thaliana

Type:

Expression profiling by genome tiling array

Platform:

GPL785

2 Samples

Download data

(Submitter supplied) This array includes 1724 PCR products, mostly 1kb long, designed to cover sequentially a 1.5 Mb region 1201322-2673088 on the short arm of chromosome 4, plus an additional thirty-six 10kb regions located on the 5 chromosomes. As spots are printed in duplicate or triplicate on the slide, the total number of features is 5743. PCR products are amplified from BACs or genomic DNA, purified, and spotted (100-120 um average diameter) on 25x75 mm aminosilane-coated Corning CMT-GAPS II glass slides Most features are spotted more than once. more...

Organism:

Arabidopsis thaliana

20 Series

34 Samples

Download data