GSM2752868[Accession] - GEO DataSets - NCBI

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Items: 4

Select item 2001031121.

GC-rich coding sequences reduce transposon-like sRNA-mediated transgene silencing in Arabidopsis and maize

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Zea mays; Arabidopsis thaliana

Type:: Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing

Platforms:: GPL15463 GPL13222 GPL20156
76 Samples

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Series

Accession:: GSE103112

ID:: 200103112

Select item 2001030372.

GC-rich coding sequences reduce transposon-like sRNA-mediated transgene silencing in Arabidopsis and maize

(Submitter supplied) The molecular basis of transgene susceptibility to silencing is poorly characterized in plants, thus we evaluated several transgene design parameters as means to reduce heritable sRNA-mediated transgene silencing. Analyses of Arabidopsis plants with transgenes encoding a microalgal polyunsaturated fatty acid (PUFA) synthase revealed that small RNA (sRNA)-mediated silencing, combined with the use of repetitive regulatory elements, led to aggressive transposable element (TE)-like silencing of canola-biased PUFA transgenes. more...

Organism:: Zea mays

Type:: Non-coding RNA profiling by high throughput sequencing

Platforms:: GPL15463 GPL20156
27 Samples

Download data: TXT

Series

Accession:: GSE103037

ID:: 200103037

SRA Run Selector

Select item 1000201563.

Illumina NextSeq 500 (Zea mays)

Organism:: Zea mays

45 Series
1310 Samples

Platform

Accession:: GPL20156

ID:: 100020156

Select item 3027528684.

pDAB447-030 T3 (pool)

Organism:: Zea mays

Source name:: Maize leaves, V5/V6

Platform:: GPL20156
Series:: GSE103037 GSE103112

Download data: TXT

Sample

Accession:: GSM2752868

ID:: 302752868

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GSM2752868[Accession] (4)
GEO DataSets
glyceraldehyde-3-phosphate dehydrogenase, partial [Pantoea sp. A0303]
glyceraldehyde-3-phosphate dehydrogenase, partial [Pantoea sp. A0303]
gi|222522783|gb|ACM63083.1|

Protein
recombination activating protein 1, partial [Elassoma okefenokee]
recombination activating protein 1, partial [Elassoma okefenokee]
gi|380751067|gb|AFE55951.1|

Protein
595287[uid] (1)
Taxonomy
Amphiesmenoptera 5S ribosomal RNA gene, partial sequence.
Amphiesmenoptera 5S ribosomal RNA gene, partial sequence.
PopSet: 2077967329

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