GEO DataSets

(Submitter supplied) The study investigated the effect of different carbon sources on E. coli global gene expression. We grew MG1655 cells aerobically in MOPS minimal medium with either glucose, glycerol, succinate, L-alanine, acetate, or L-proline as the carbon supply. Samples were taken from each culture at mid log phase and were RNA-stabilized using Qiagen RNAProtect Bacterial Reagent (Qiagen). Total RNA was then isolated using MasterPure kits (Epicentre Technologies). more...

Organism:

Escherichia coli; Escherichia coli K-12

Type:

Expression profiling by array

Dataset:

GDS1099

Platform:

GPL199

15 Samples

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Analysis of MG1655 cells grown aerobically in several media each with a different carbon source. Carbon sources used in decreasing order of quality were glucose, glycerol, succinate, L-alanine, acetate, and L-proline. Results provide insight into the response of cells to carbon source quality.

Organism:

Escherichia coli; Escherichia coli K-12

Type:

Expression profiling by array, count, 6 growth protocol sets

Platform:

GPL199

Series:

GSE2037

15 Samples

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(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Has 7312 entries and was indexed 20-May-2002. The GeneChip E. coli Antisense Genome Array can be used for examining expression of all known E. coli genes and discovering novel, uncharacterized intergenic transcripts. The array contains probe sets to detect the antisense strand of more than 4,200 known open reading frames. more...

Organism:

Escherichia coli K-12

6 DataSets

54 Series

1 Related Platform

947 Samples

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