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GEO DataSets

Functional Genomics Studies

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Items: 3

Select item 2001360971.

Transcriptomic profiles of Pseudomonas aeruginosa PAO1 grown in the presence or absence of mucins or mucin-glycans

(Submitter supplied) We use high-throughput sequencing to profile the response of the opportunistic mucosal pathogen Pseudomonas aeruginosa to mucins and mucin-glycans from the mucosal niche. We find that P. aeruginosa undergoes a genome-wide phenotypic shift in response to mucins and their attached glycans. Specifically, nearly all virulence pathways are downregulated in response to these host-produced factors. This study provides a framework for understanding how the host environment regulates bacterial function.

Organism:: Pseudomonas aeruginosa

Type:: Expression profiling by high throughput sequencing

Platform:: GPL18644
15 Samples

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Series

Accession:: GSE136097

ID:: 200136097

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000186442.

Illumina HiSeq 2000 (Pseudomonas aeruginosa)

Organism:: Pseudomonas aeruginosa

26 Series
177 Samples

Platform

Accession:: GPL18644

ID:: 100018644

Select item 3040411023.

Organism:: Pseudomonas aeruginosa

Source name:: Planktonic bacterial cultures

Platform:: GPL18644
Series:: GSE136097

Sample

Accession:: GSM4041102

ID:: 304041102

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GSM4041102[Accession] (3)
GEO DataSets
GSE136097[Accession] (17)
GEO DataSets
zinc finger protein 267 isoform 1 [Homo sapiens]
zinc finger protein 267 isoform 1 [Homo sapiens]
gi|1519313465|ref|NP_003405.4|

Protein
Homo sapiens group IVB cytosolic phospholipase A2 beta splice variant 3 mRNA, co...
Homo sapiens group IVB cytosolic phospholipase A2 beta splice variant 3 mRNA, complete cds, alternatively spliced
gi|100215664|gb|DQ523800.1|

Nucleotide
txid9527[Organism] (5)
Conserved Domains

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