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GEO DataSets

Functional Genomics Studies

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Items: 3

Select item 2001450721.

Genome-wide assessment of population structure and genetic diversity of Eucalyptus urophylla based on a multi-species single nucleotide polymorphism chip analysis

(Submitter supplied) Eucalyptus urophylla is a commercially important wood crop plantation species due to its rapid growth, biomass yield, and use as bioenergy feedstock. We characterized the genetic diversity and population structure of 332 E. urophylla individuals from 19 geographically defined E. urophylla populations with a reliability of 14,468 single nucleotide polymorphisms (SNPs). We compared the patterns of genetic variation among these 19 populations. more...

Organism:: Eucalyptus urophylla

Type:: Genome variation profiling by SNP array; SNP genotyping by SNP array

Platform:: GPL28143
382 Samples

Download data: IDAT, TXT

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Accession:: GSE145072

ID:: 200145072

Select item 1000281432.

Illumina EUChip60k SNP array

(Submitter supplied) Detailed info on the SNP contained in this chip (genome location, target SNP, flanking sequence) in Silva-Junior et al. (2015). See Table S3 Infinium SNP probe sequence, ADT score and genome coordinate of the 60 904 SNPs of the EUChip60k. Protocol: see Illumina web site