GEO DataSets

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Macaca mulatta; Homo sapiens; Canis lupus familiaris; Bos taurus; Ovis aries; Mus musculus; Rattus norvegicus; Gallus gallus; Sus scrofa; Oryctolagus cuniculus; Danio rerio; Felis catus

Type:

Expression profiling by high throughput sequencing; Other

12 related Platforms

54 Samples

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(Submitter supplied) Three-dimensional genome architecture influences the regulation of essential nuclear processes, such as gene transcription. However, how 3D genome architecture is affected by evolutionary forces within major lineages remains unclear. Here, we report a comprehensive comparison of 3D genomes, using high resolution Hi-C data in fibroblast cells of fish, chickens, and 10 mammalian species. This analysis shows a correlation between genome size and chromosome length that affects chromosomal territory (CT) organization in the upper hierarchy of genome architecture, whereas lower hierarchical features, including local transcriptional availability of DNA, are selected through vertebrate’s evolution. more...

Organism:

Danio rerio; Gallus gallus; Macaca mulatta; Felis catus; Bos taurus; Ovis aries; Oryctolagus cuniculus; Rattus norvegicus; Homo sapiens; Mus musculus; Canis lupus familiaris

Type:

Other

11 related Platforms

25 Samples

Download data: BED, HDF5, XLS