GSM577118[Accession] - GEO DataSets - NCBI

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Items: 3

Select item 2000224101.

Multimodal RNA-seq using single-strand, double-strand, and circligase-based capture yields a refined and extended description of the C. elegans transcriptome

(Submitter supplied) We have used a combination of three high-throughput RNA capture and sequencing methods to refine and augment the transcriptome map of a well studied genetic model, Caenorhabditis elegans. The three methods include a standard (non-directional) library preparation protocol relying on cDNA priming and foldback that has been used in several previous studies for transcriptome characterization in this species, and two directional protocols, one involving direct capture of single stranded RNA fragments and one involving circular-template PCR (circligase). more...

Organism:: Caenorhabditis elegans

Type:: Expression profiling by high throughput sequencing

Platform:: GPL9269
16 Samples

Download data: FA, TXT

Series

Accession:: GSE22410

ID:: 200022410

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000092692.

Illumina Genome Analyzer II (Caenorhabditis elegans)

Organism:: Caenorhabditis elegans

92 Series
458 Samples

Platform

Accession:: GPL9269

ID:: 100009269

Select item 3005771183.

N2_L4_ssRNALigSeq

Organism:: Caenorhabditis elegans

Source name:: whole L4 hermaphrodite

Platform:: GPL9269
Series:: GSE22410

Download data: FA

Sample

Accession:: GSM577118

ID:: 300577118

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GSM577118[Accession] (3)
GEO DataSets
AU114256 unpublished oligo-capped cDNA library Caenorhabditis elegans cDNA clone...
AU114256 unpublished oligo-capped cDNA library Caenorhabditis elegans cDNA clone yk716h9 3', mRNA sequence
gi|10927823|gnl|dbEST|6504374|dbj|A 56.1|

Nucleotide
sco-1 Thioredoxin domain-containing protein [Caenorhabditis elegans]
sco-1 Thioredoxin domain-containing protein [Caenorhabditis elegans]
Gene ID:173763

Gene
pud-3 Up-regulated in Daf-2 domain-containing protein [Caenorhabditis elegans]
pud-3 Up-regulated in Daf-2 domain-containing protein [Caenorhabditis elegans]
Gene ID:178711

Gene

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