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| Status |
Public on Sep 22, 2009 |
| Title |
Illumina Genome Analyzer II (Caenorhabditis elegans) |
| Technology type |
high-throughput sequencing |
| Distribution |
virtual |
| Organism |
Caenorhabditis elegans |
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| Submission date |
Sep 22, 2009 |
| Last update date |
Nov 20, 2017 |
| Contact name |
GEO |
| Country |
USA |
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| Samples (458)
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GSM351150, GSM351151, GSM351152, GSM351153, GSM351154, GSM351155
GSM351156, GSM351157, GSM351158, GSM351159, GSM351160, GSM351161, GSM351162, GSM351163, GSM427297, GSM427301, GSM427332, GSM427344, GSM427345, GSM427346, GSM432720, GSM432721, GSM432722, GSM432723, GSM432724, GSM454000, GSM454001, GSM454002, GSM454003, GSM454004, GSM455387, GSM455388, GSM455389, GSM455390, GSM455391, GSM455392, GSM455393, GSM455394, GSM455395, GSM455396, GSM455397, GSM455398, GSM455399, GSM455400, GSM455401, GSM455402, GSM455403, GSM455404, GSM459328, GSM459329, GSM459330, GSM459331, GSM459332, GSM463025, GSM463026, GSM463027, GSM463028, GSM463029, GSM463030, GSM464606, GSM464607, GSM464608, GSM464609, GSM464610, GSM464611, GSM464612, GSM464613, GSM465244, GSM465245, GSM465246, GSM465247, GSM503820, GSM503821, GSM503822, GSM503823, GSM503824, GSM503825, GSM503826, GSM503827, GSM503828, GSM503829, GSM503830, GSM503831, GSM503832, GSM503833, GSM503834, GSM503835, GSM503836, GSM503837, GSM503838, GSM503839, GSM503840, GSM503841, GSM503842, GSM503843, GSM503844, GSM503845, GSM509582, GSM509583, GSM509584, GSM514735, GSM514736, GSM518370, GSM518371, GSM542235, GSM542236, GSM577107, GSM577108, GSM577109, GSM577110, GSM577111, GSM577112, GSM577113, GSM577114, GSM577115, GSM577116, GSM577117, GSM577118, GSM577119, GSM577120, GSM577121, GSM577122, GSM590213, GSM590214, GSM590215, GSM596154, GSM596155, GSM596156, GSM599723, GSM599724, GSM599725, GSM599726, GSM608720, GSM612873, GSM612874, GSM612875, GSM612876, GSM612877, GSM612878, GSM612879, GSM612880, GSM612881, GSM612882, GSM632210, GSM632211, GSM632212, GSM632213, GSM642427, GSM642428, GSM642429, GSM642430, GSM642431, GSM665342, GSM665343, GSM665344, GSM665345, GSM665346, GSM665347, GSM665348, GSM665349, GSM665350, GSM665351, GSM665352, GSM665353, GSM665354, GSM665355, GSM665356, GSM665357, GSM665358, GSM665359, GSM665360, GSM665361, GSM665362, GSM665363, GSM665364, GSM665365, GSM665366, GSM665367, GSM665368, GSM665369, GSM665370, GSM665371, GSM665372, GSM665373, GSM665374, GSM665375, GSM665376, GSM665377, GSM665378, GSM665379, GSM706159, GSM706160, GSM706161, GSM706162, GSM706163, GSM706164, GSM706165, GSM706166, GSM706167, GSM708660, GSM708661, GSM708662, GSM708663, GSM708664, GSM708665, GSM708666, GSM712543, GSM712544, GSM712545, GSM712707, GSM712708, GSM712709, GSM712710, GSM712711, GSM712712, GSM712713, GSM712714, GSM712810, GSM712811, GSM713136, GSM713137, GSM713138, GSM713139, GSM713140, GSM713141, GSM713142, GSM713143, GSM713144, GSM713145, GSM713146, GSM713147, GSM713148, GSM713149, GSM713150, GSM713151, GSM713152, GSM713168, GSM713169, GSM713170, GSM713171, GSM713172, GSM713173, GSM713174, GSM713175, GSM713176, GSM713177, GSM713232, GSM713233, GSM713234, GSM713235, GSM715830, GSM715831, GSM715832, GSM715833, GSM715834, GSM727906, GSM727907, GSM727908, GSM727909, GSM727910, GSM727911, GSM732108, GSM732110, GSM732112, GSM759539, GSM779422, GSM779423, GSM779424, GSM779439, GSM779440, GSM788484, GSM788485, GSM788486, GSM788487, GSM788488, GSM788489, GSM788490, GSM788491, GSM801357, GSM801358, GSM801359, GSM801360, GSM801361, GSM801362, GSM801363, GSM823808, GSM823809, GSM823810, GSM823811, GSM823812, GSM823813, GSM829554, GSM829555, GSM829556, GSM829557, GSM830458, GSM830459, GSM830460, GSM830461, GSM830462, GSM847423, GSM847424, GSM870220, GSM870221, GSM870222, GSM870223, GSM870224, GSM870225, GSM870226, GSM870227, GSM910365, GSM910366, GSM910367, GSM910368, GSM910369, GSM910370, GSM910371, GSM910372, GSM910373, GSM910374, GSM910375, GSM948669, GSM948670, GSM948671, GSM948672, GSM948673, GSM948674, GSM948675, GSM948676, GSM948677, GSM948678, GSM948679, GSM948680, GSM948681, GSM948682, GSM948683, GSM948684, GSM948685, GSM984426, GSM984427, GSM984428, GSM984433, GSM984434, GSM984435, GSM984436, GSM1016455, GSM1027153, GSM1027154, GSM1048410, GSM1048424, GSM1056292, GSM1056293, GSM1067099, GSM1067100, GSM1067101, GSM1067102, GSM1083459, GSM1083460, GSM1083461, GSM1186795, GSM1186796, GSM1186797, GSM1186801, GSM1186802, GSM1248097, GSM1248099, GSM1248101, GSM1248103, GSM1248105, GSM1248107, GSM1248109, GSM1291066, GSM1291067, GSM1291068, GSM1291069, GSM1291070, GSM1291071, GSM1291072, GSM1291073, GSM1291074, GSM1291075, GSM1291076, GSM1291077, GSM1291078, GSM1291079, GSM1304680, GSM1304681, GSM1433062, GSM1433063, GSM1433064, GSM1433065, GSM1462555, GSM1462556, GSM1672279, GSM1672280, GSM2233444, GSM2233445, GSM2233446, GSM2339594, GSM2339595, GSM2339599, GSM2339604, GSM2339605, GSM2339606, GSM2339609, GSM2339613, GSM2339614, GSM2339620, GSM2339640, GSM2339645, GSM2339657, GSM2339658, GSM2339661, GSM2339662, GSM2339665, GSM2495690, GSM2495696, GSM2495697, GSM2495702, GSM2495706, GSM2495716, GSM2495717, GSM2495722, GSM2495728, GSM2495729, GSM2495731, GSM2862374, GSM2862375, GSM2862376, GSM3861098, GSM3861099, GSM3861100, GSM3861101, GSM3861102, GSM3861103, GSM3861104, GSM3861105, GSM3861106, GSM3861107, GSM3861108, GSM3861109, GSM3861110, GSM3861111, GSM3861112, GSM3861113, GSM3861114, GSM3861115, GSM3861116, GSM3861117, GSM4693922, GSM4693923, GSM4693926, GSM4693927, GSM4693932, GSM4693933, GSM4693934, GSM4693935, GSM4693936
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| Series (92)
|
| GSE13973 |
ChIP-Seq of RNA Pol II with antibodies S2, 4H8 and 8WG16 during C. elegans L1 arrest and recovery |
| GSE14009 |
Nutritional control of gene expression during C. elegans L1 arrest and recovery |
| GSE17153 |
Illumina sequencing of small RNAs from C. elegans embryos |
| GSE17284 |
Partitioning the C. elegans genome by nucleosome modification, occupancy, and positioning |
| GSE18165 |
High-throughput pyrosequencing of endogenous small RNAs from CSR-1 IP complexes and csr-1(tm892) and ego-1(om97) mutants |
| GSE18167 |
Gene expression in csr-1 mutants and sequencing of sRNAs from CSR-1 IP complexes and csr-1 and ego-1 mutants |
| GSE18215 |
High throughput sequencing of mutants in the WAGO pathway |
| GSE18231 |
WAGO pathway |
| GSE18429 |
Endo-siRNAs in C. elegans spermatogenesis and their requirement for the RdRP RRF-3 |
| GSE18634 |
Changes in expression of small non-coding RNAs/microRNAs during aging in C. elegans |
| GSE18714 |
Sequential rounds of RNA-dependent RNA transcription drive endogenous small-RNA biogenesis in ERGO-1/Argonaute pathway |
| GSE18729 |
High throughput sequencing of endogenous small RNAs from AGO pathway mutants |
| GSE18731 |
AGO pathway |
| GSE19414 |
Distinct phases of siRNA synthesis in an endogenous RNAi pathway in C. elegans soma |
| GSE20136 |
Genome-wide nucleosome occupancy profiling by high throughput sequencing, and microarray analysis of RNA abundance |
| GSE20336 |
Comparison of small RNA levels in Dicer helicase mutants |
| GSE20649 |
MicroRNA-Directed siRNA Biogenesis in Caenorhabditis elegans |
| GSE21736 |
Novel viruses naturally infecting Caenorhabditis nematodes trigger a small RNA response |
| GSE22410 |
Multimodal RNA-seq using single-strand, double-strand, and circligase-based capture yields a refined and extended description of the C. elegans transcriptome |
| GSE24241 |
seq-SDQ3891_LEM2_N2_MXemb |
| GSE24318 |
seq-WA30534819_H3K4me3_N2_MXemb |
| GSE24704 |
Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer |
| GSE24924 |
Formation, regulation and evolution of 3' UTRs in Caenorhabditis elegans |
| GSE25739 |
Changes in expression of small non-coding RNAs, including microRNAs, in response to stress in C. elegans |
| GSE25933 |
Caenorhabditis elegans chromosome arms are anchored to the nuclear membrane via discontinuous association with LEM-2 |
| GSE26165 |
mut-16 and other mutator-class genes modulate 22G and 26G siRNA pathways in Caenorhabditis elegans |
| GSE26579 |
mRNA sequencing from ego-1(om84) and control L3, L4, and adult C. elegans hermaphrodites |
| GSE26580 |
5'-monophosphate-dependent small RNA sequencing from ego-1(om84) and control adult C. elegans hermaphrodites |
| GSE26581 |
5'-monophosphate-independent small RNA sequencing from ego-1(om84) and control L3, L4, and adult C. elegans hermaphrodites |
| GSE26582 |
EGO-1, an essential C. elegans RdRP, modulates gene expression through the mRNA-templated production of short antisense effector RNAs |
| GSE28617 |
Function, targets and evolution of Caenorhabditis elegans piRNAs (small RNA-Seq) |
| GSE28756 |
seq-AB1791_H3_N2_L3 |
| GSE28757 |
seq-AR0144_H3_144_N2_L3 |
| GSE28758 |
seq-BH00001_LIN52_N2_L3 |
| GSE28759 |
seq-BH00003_LIN37_N2_L3 |
| GSE28760 |
seq-BH00004_LIN54_N2_L3 |
| GSE28761 |
seq-BH00005_LIN9_N2_L3 |
| GSE28762 |
seq-JA00001_HTZ1_N2_L3 |
| GSE28763 |
seq-JA00011_LIN35_N2_L3 |
| GSE28764 |
seq-JL00002_SDC3_N2_L3 |
| GSE28765 |
seq-LPAR109_H4tetraac_109_N2_L3 |
| GSE28766 |
seq-SDQ0820_EPC1_N2_L3_EGS |
| GSE28767 |
seq-SDQ2370_LIN53_N2_L3 |
| GSE28768 |
seq-SDQ3590_EFL1_N2_L3 |
| GSE28769 |
seq-SDQ3599_DPL1_N2_L3 |
| GSE28770 |
seq-WA30534819_H3K4me3_N2_L3 |
| GSE28771 |
seq-WA30932379_H3K9ac_N2_L3 |
| GSE28772 |
seq-SDQ4470_TAG315_N2_MXemb |
| GSE28773 |
seq-SDQ4526_SFC1_N2_Mxemb |
| GSE28774 |
seq-SDQ4663_RPC1_N2_Mxemb |
| GSE28775 |
seq-WA30534819_H3K4me3_N2_Mxemb |
| GSE28776 |
seq-AB9050_H3K36me3_N2_L3 |
| GSE28777 |
seq-JL00001_DPY27_N2_L3 |
| GSE28888 |
Effects of ADARs on small RNA processing pathways in C. elegans |
| GSE29427 |
Systematic bias in high-throughput sequencing data and its correction by BEADS |
| GSE29571 |
Global analysis of RNA secondary structure conservation between two metazoans |
| GSE30612 |
[E-MTAB-533] GENCODE Targeted Sequencing Batch III |
| GSE31783 |
rem-1 analysis in C. elegans |
| GSE32366 |
The ERI-6/7 helicase acts at the first stage of an siRNA amplification pathway that targets recent gene duplications. |
| GSE33313 |
sRNA profiles of control adults, postdauer adults, larva L3, and dauer stages of C. elegans |
| GSE33543 |
In vivo and transcriptome-wide identification of RNA-binding protein target sites |
| GSE33569 |
In vivo and transcriptome-wide identification of RNA-binding protein target sites [PAR-CLIP] |
| GSE33594 |
C elegans N2 Late embryo input control |
| GSE34320 |
Analysis of 22G siRNA triggered siRNA amplification in Caenorhabditis elegans |
| GSE35529 |
MicroRNAs induced during response to stress in C. elegans |
| GSE35550 |
Analysis of 22G siRNA triggered siRNA amplification and 3' 2'-O-methylated small RNAs in Caenorhabditis elegans |
| GSE37083 |
The Caenorhabditis elegans RDE-10/RDE-11 complex regulates RNAi by promoting secondary siRNA amplification |
| GSE37433 |
Function, targets and evolution of Caenorhabditis elegans piRNAs |
| GSE38723 |
C. elegans piRNAs mediate the genome-wide surveillance of germline transcripts |
| GSE38724 |
piRNAs initiate an epigenetic memory of non-self RNA in the C. elegans germline. |
| GSE40053 |
C. elegans piRNAs are processed from capped-small RNAs transcribed at promoters throughout the genome |
| GSE41402 |
microRNAs in C. elegans, P. pacificus, and S. ratti: Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes |
| GSE41900 |
Phosphate-independent small RNA sequencing of WT and mir-249 mutant C. elegans |
| GSE42714 |
Integral nuclear pore proteins bind to Pol III genes and are required for Pol III transcript processing in C. elegans [seq] |
| GSE42741 |
Chromatin Immunoprecipitation of Nuclear Pore Proteins in C. elegans |
| GSE43086 |
Binding of the C. elegans dosage compensation complex protein DPY-27 |
| GSE43087 |
Condensin Controls Recruitment of RNA Polymerase II to Achieve X-Chromosome Dosage Compensation |
| GSE43614 |
NO-mediated transcriptional response in C. elegans |
| GSE44336 |
Degradome sequencing reveals an endogenous microRNA target in C. elegans |
| GSE48917 |
Chromatin Immunoprecipitation of TRA-1 in C. elegans and C. briggsae |
| GSE51556 |
The dsRBP and inactive editor, ADR-1, utilizes dsRNA binding to regulate A-to-I RNA editing across the C. elegans transcriptome |
| GSE53412 |
The C. elegans SNAP complex component SNPC-4 coats piRNA domains and globally affects piRNA abundance |
| GSE53970 |
A Genome-wide RNAi screen identifies factors required for distinct stages of C. elegans piRNA biogenesis |
| GSE59300 |
A Ribonuclease Coordinates siRNA Amplification and mRNA Cleavage during RNAi |
| GSE59943 |
Blastomere-specific transcriptome sequencing reveals a determinant of anterior specification in C. elegans |
| GSE68464 |
Transcriptome analysis of N2 and flp-6 Caenorhabditis elegans at 25 °C |
| GSE84419 |
A novel small molecule that disrupts the oocyte-to-embryo transition in C. elegans |
| GSE87741 |
Cooperation between a hierarchical set of recruitment sites specifically targets the C. elegans dosage compensation complex to the X chromosomes. |
| GSE95071 |
Loss of the Caenorhabditis elegans pocket protein LIN-35 reveals MuvB’s innate function as the repressor of DREAM target genes |
| GSE107190 |
The germline-specific factor OEF-1 facilitates coordinated progression through germ cell development in C. elegans |
| GSE117061 |
Isolated C. elegans germ nuclei exhibit distinct genomic profiles of histone modification and gene expression |
| GSE150690 |
The RNA phosphatase PIR-1 regulates endogenous small RNA pathways in C. elegans |
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| Supplementary data files not provided |
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