U.S. flag

An official website of the United States government

Format
Sort by

Send to:

Choose Destination

Search results

Items: 3

1.

Guidelines for performing Ribosome Profling in Plants Including Structural Analysis of rRNA fragments

(Submitter supplied) Here, we compile valuable insights gathered over years of generating Ribo-seq datasets from different plant species and experimental setups. We tested the effects of variable ribonuclease treatments for the generation of ribosome protected fragments (RPFs). We tested rRNA depletion strategies designed specifically for Arabidopsis and Tobacco. We also compare ligation-free to ligation-based library preparation strategies for generating Ribo-seq libraries.
Organism:
Arabidopsis thaliana; Nicotiana tabacum
Type:
Other
4 related Platforms
16 Samples
Download data: XLSX
Series
Accession:
GSE226508
ID:
200226508

PubMed Full text in PMC Similar studies

2.

Illumina NextSeq 500 (Arabidopsis thaliana)

Organism:
Arabidopsis thaliana
400 Series
9124 Samples
Download data
Platform
Accession:
GPL19580
ID:
100019580

3.

Ath RPFs, 400 U RNaseI

Organism:
Arabidopsis thaliana
Source name:
14-day old seedlings
Platform:
GPL19580
Series:
GSE226508
Download data
Sample
Accession:
GSM7078146
ID:
307078146

SRA Run Selector

Format
Sort by

Send to:

Choose Destination

Supplemental Content

Filters: Manage Filters

db=gds|term=GSM7078146[Accession]|query=11|qty=3|blobid=MCID_673616c826808c4a2040dd46|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
   Taxonomic Groups  [List]
Tree placeholder
    Top Organisms  [Tree]

Find related data

Search details

See more...

Important Links

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > Genes & Expression > Gene Expression Omnibus (GEO) Datasets
Support Center