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Items: 7

1.

Comparative Validation of the D. melanogaster Encyclopedia of DNA Elements Transcript Models

(Submitter supplied) The model organism Encyclopedia of DNA Elements project (modENCODE) has produced a comprehensive annotation of D. melanogaster transcript models based on an enormous amount of high-throughput experimental data. However, some transcribed elements may not be functional, and technical artifacts may lead to erroneous inference of transcription. Inter-species comparison provides confidence to predicted annotation, since transcriptional activity that has been evolutionarily conserved is likely to have an advantageous function. more...
Organism:
Drosophila eugracilis; Drosophila takahashii; Drosophila ficusphila; Drosophila kikkawai; Drosophila bipectinata; Drosophila rhopaloa; Drosophila mojavensis; Drosophila yakuba; Drosophila melanogaster; Drosophila pseudoobscura; Drosophila ananassae; Drosophila simulans; Drosophila virilis; Drosophila elegans; Drosophila biarmipes
Type:
Expression profiling by high throughput sequencing
34 related Platforms
93 Samples
Download data: BAM, BED, RPKM, TXT
Series
Accession:
GSE44612
ID:
200044612

PubMed Full text in PMC Similar studies modENCODE

2.

mRNA-Seq of whole adult females and males, and miixed sex embryos, from multiple Drosophila species

(Submitter supplied) We performed transcriptional profiling of sexed whole adults and mixed sex embryos of eight Drosophila species. These data were used in a comparative transcriptomics analysis of multiple Drosophila species to define functional elements conserved throughout the Drosophila genus.
Organism:
Drosophila elegans; Drosophila eugracilis; Drosophila takahashii; Drosophila kikkawai; Drosophila rhopaloa; Drosophila biarmipes; Drosophila ficusphila; Drosophila bipectinata
Type:
Expression profiling by high throughput sequencing
16 related Platforms
26 Samples
Download data: RPKM, TXT
Series
Accession:
GSE43321
ID:
200043321

PubMed Full text in PMC Similar studies modENCODESRA Run Selector

3.

Illumina Genome Analyzer IIx (Drosophila rhopaloa)

Organism:
Drosophila rhopaloa
2 Series
2 Samples
Download data
Platform
Accession:
GPL16472
ID:
100016472

4.

Illumina HiSeq 2000 (Drosophila rhopaloa)

Organism:
Drosophila rhopaloa
2 Series
1 Sample
Download data
Platform
Accession:
GPL16471
ID:
100016471

5.

Drho_Embryo_replicate1

Organism:
Drosophila rhopaloa
Source name:
Embryos
Platform:
GPL16471
Series:
GSE43321 GSE44612
Download data: RPKM, TXT
Sample
Accession:
GSM1060502
ID:
301060502

SRA Run Selector

6.

Drho_Male_replicate1

Organism:
Drosophila rhopaloa
Source name:
Whole body
Platform:
GPL16472
Series:
GSE43321 GSE44612
Download data: RPKM, TXT
Sample
Accession:
GSM1060504
ID:
301060504

SRA Run Selector

7.

Drho_Female_replicate1

Organism:
Drosophila rhopaloa
Source name:
Whole body
Platform:
GPL16472
Series:
GSE43321 GSE44612
Download data: RPKM, TXT
Sample
Accession:
GSM1060503
ID:
301060503

SRA Run Selector

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db=gds|term=txid1041015[Organism:noexp]|query=24|qty=16|blobid=MCID_6737a7c0bea12f4e7c7a6060|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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