GEO DataSets

(Submitter supplied) PRO-seq experiments in multiple organisms. Also, PRO-seq experiment of Nelfb and Nelfe degron mESC in serum/LIF with or without dTAG-13. 

Organism:

Escherichia coli; Mus musculus; Perkinsus marinus; Dictyostelium discoideum; Capsaspora owczarzaki; Creolimax fragrantissima; Daphnia pulex; Strongylocentrotus purpuratus; Sphaeroforma arctica; Haloferax mediterranei; Dryas iulia; Nematostella vectensis

Type:

Other

12 related Platforms

46 Samples

Download data

(Submitter supplied) We assessed temporal gene expression in synchronous cultures of Capsaspora owczarzaki in order to better understand cell cycle regulation in another opisthokont more closely related to animals retaining the ancestral toolkit of cell cycle regulators. Our data suggests that cell cycle regulation in the ancestor of Capsaspora and animals involved one single CDK binding to multiple cyclins of subfamilies in the same temporal order as in animals, and that expansion of CDKs occured later in the lineage that gave rise to animals.

Organism:

Capsaspora owczarzaki

Type:

Expression profiling by high throughput sequencing

Platform:

GPL27855

33 Samples

Download data: TXT

(Submitter supplied) The spatial and temporal regulation of transcription initiation is pivotal for controlling gene expression. Here, we introduce capped-small RNA-seq (csRNA-seq), which uses total RNA as starting material to detect transcription start sites (TSS) of both stable and unstable RNAs at single-nucleotide resolution. csRNA-seq is highly sensitive to acute changes in transcription and identifies an order of magnitude more regulated transcripts than RNA-seq. more...

Organism:

Nematostella vectensis; Oryza sativa; Homo sapiens; Mus musculus; Neurospora crassa; Capsaspora owczarzaki

Type:

Other

10 related Platforms

40 Samples

Download data: BIGWIG, BW, TXT

(Submitter supplied) We carried out multiple functional genomic assays in Capsaspora owczarzaki, the unicellular relative of animals with the largest known gene repertoire for transcriptional regulation. We show that changing chromatin states, differential lincRNA expression and dynamic cis-regulatory sites are associated with life cycle transitions in Capsaspora.

Organism:

Capsaspora owczarzaki

Type:

Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing

Platform:

GPL20718

33 Samples

Download data: BED, BEDGRAPH, BROADPEAK, NARROWPEAK, TXT