GEO DataSets

(Submitter supplied) Soft rot or Rhizopus rot, caused by the fungal pathogen Rhizopus stolonifer, is an aggressive postharvest disease that affects many fruit and vegetables. We proposed that R. stolonifer displays a necrotrophic behavior when infecting fruit, actively killing the host tissues to complete its life cycle. We tested this hypothesis by identifying R. stolonifer infection strategies when interacting with four fruit hosts (tomato, grape, strawberry, and plum). more...

Organism:

Fragaria x ananassa; Prunus domestica; Solanum lycopersicum; Vitis vinifera; Rhizopus stolonifer

Type:

Expression profiling by high throughput sequencing

5 related Platforms

49 Samples

Download data: CSV

(Submitter supplied) We injected 0.1mM of the hypomethylating agent 5-azacytidine to halves of green, unripen strawberry receptacles. The other halves were injected with water and used as control. Control tissues ripened normally whereas the 5-azacytidine treated tissues remained green and unripen Both tissues were separated with a scalpel, and frozen at -80ºC until use

Organism:

Fragaria x ananassa

Type:

Expression profiling by high throughput sequencing

Platform:

GPL22317

6 Samples

Download data: H5, JSON, TSV

(Submitter supplied) Report of an RNA-Seq analysis done with strawberries taken from MYB123 RNAi silenced and stable transgenic plants vs control plants transformed with the pFRN empty vector

Organism:

Fragaria x ananassa

Type:

Expression profiling by high throughput sequencing

Platform:

GPL22317

6 Samples

Download data: TAR

(Submitter supplied) For exploring the influence of the m6A methyltransferase gene MTA silencing in the global m6A mRNA methylomes of strawberry fruits, we performed m6A-seq in the MTA RNAi strawberry fruits (RNAi-MTA) and the controls with three independently biological replicates. Results showed that MTA silencing induces the m6A hypomethylation of thousands of transcripts, including those of ripening and ABA pathway genes.

Organism:

Fragaria x ananassa

Type:

Expression profiling by high throughput sequencing; Other

Platform:

GPL30166

12 Samples

Download data: BW

(Submitter supplied) In contrast to climacteric fruits such as tomato, the knowledge on key regulatory genes controlling the ripening of strawberry, a non-climacteric fruit, is still limited. NAC transcription factors mediate different developmental processes in plants. Here, we identified and characterized FaRIF (Ripening Inducing Factor), a NAC transcription factor that is highly expressed and induced in strawberry receptacles during ripening. more...

Organism:

Fragaria x ananassa

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL15080 GPL29745

30 Samples

Download data: TXT

(Submitter supplied) Strawberry cultivation is associated with high mineral fertilizer doses and excessive use of chemical plant protection products. Based on previous research, we expected that chitin application to the growing medium will increase the nutrient availability and activate the plant’s systemic defense response, resulting in higher strawberry yields and less disease symptoms. We set up two experiments in which the temporal variability and differences in initial nutrient concentrations of the growing media were taken into account. more...

Organism:

Fragaria x ananassa

Type:

Expression profiling by high throughput sequencing

Platform:

GPL28097

18 Samples

Download data: TXT

(Submitter supplied) Strawberry is economically important and widely grown but susceptible to a large variety of phytopathogenic organisms. Among them, Xanthomonas fragariae is a quarantine bacterial pathogen threatening strawberry productions by causing angular leaf spots. Using whole transcriptome sequencing, gene expression of both plant and bacteria in planta was analyzed at two time points, 12- and 29-days post inoculation, in order to compare pathogen and host response between the stages of early visible and of well-developed symptoms. more...

Organism:

Fragaria x ananassa

Type:

Expression profiling by high throughput sequencing

Platform:

GPL22317

6 Samples

Download data: DIFF, FPKM_TRACKING

(Submitter supplied) The role played by transcription factors in the regulation of strawberry fruit ripening process is scant. We have identified and functionally characterized FaPRE1, a non-DNA-binding bHLH transcription factor. FaPRE1 is a ripening-related transcription factor that regulates genes involved in cell architecture in strawberry fruit receptacles.

Organism:

Fragaria x ananassa

Type:

Expression profiling by array

Platform:

GPL24234

6 Samples

Download data: TXT

(Submitter supplied) Strawberry is an ideal model for studying the molecular biology of the development and ripening of non-climacteric fruits. By using a custom-made and high quality oligo microarray platform done with over 32000 probes including all of the genes actually described in the strawberry genome, we have analyzed the expression of genes during the development and ripening in the receptacles of these fruits.

Organism:

Fragaria x ananassa

Type:

Expression profiling by array

Platform:

GPL26165

4 Samples

Download data: TXT

(Submitter supplied) The role played by transcription factors in the regulation of strawberry fruit ripening process is scant. We have identified and functionally characterized FaPRE1, a non-DNA-binding bHLH transcription factor. FaPRE1 is a ripening-related transcription factor that regulates genes involved in cell architecture in strawberry fruit receptacles.

Organism:

Fragaria x ananassa

Type:

Expression profiling by array

Platform:

GPL24234

6 Samples

Download data: TXT

(Submitter supplied) Pink-flowered strawberry is a new promising ornamental flower derived from intergeneric hybridization (Fragaria × Potentilla) with bright color, prolonged flowering period and edible fruits. However, the transcriptional events underlying anthocyanins biosynthesis pathway have not been fully characterized in its petal coloration. The pigment compounds accumulated in its fruits were the same as cultivated strawberry, but different from in its flowers. more...

Organism:

Fragaria x ananassa

Type:

Expression profiling by high throughput sequencing

Platform:

GPL22317

9 Samples

Download data: FASTA, TXT

(Submitter supplied) DNA methylation is a conserved epigenetic mark that influences diverse biological processes in many eukaryotes. Recently, DNA methylation was proposed to regulate fleshy fruit ripening. Fleshy fruits can be distinguished by their ripening process as climacteric fruits, such as tomatoes, or non-climacteric fruits, such as strawberries. Tomatoes undergo a global decrease in DNA methylation during ripening, due to increased expression of a DNA demethylase gene. more...

Organism:

Fragaria x ananassa

Type:

Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing; Methylation profiling by high throughput sequencing

Platform:

GPL24888

17 Samples

Download data: BW, FA, GFF3, TXT

(Submitter supplied) The role played by transcription factors in the regulation of strawberry fruit ripening process is scant. We have identified and functionally characterized FaDOF2, a DOF-type transcription factor. FaDOF2 is a ripening-related transcription factor that regulates key genes involved in eugenol biosynthesis in strawberry fruit receptacles.

Organism:

Fragaria x ananassa

Type:

Expression profiling by array

Platform:

GPL23035

6 Samples

Download data: PAIR

(Submitter supplied) Strawberry is an ideal model for studying the molecular biology of the development and ripening of non-climacteric fruits. By using a custom-made and high quality oligo microarray platform done with over 32000 probes including all of the genes actually described in the strawberry genome, we have analyzed the expression of genes during the development and ripening in the receptacles of these fruits.

Organism:

Fragaria x ananassa

Type:

Expression profiling by array

Platform:

GPL23100

6 Samples

Download data: PAIR

(Submitter supplied) By employing the high-throughput sequencing technology, we comprehensively analyzed the transcriptomic and miRNA expression profiles simultaneously in ABA- and nordihydroguaiaretic acid (NDGA, an ABA biosynthesis blocker)-treated strawberry fruits with a temporal resolution. The miRNAs target genes were validated by degradome sequencing.

Organism:

Fragaria x ananassa

Type:

Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing

Platform:

GPL22317

28 Samples

Download data: FA, FASTA, XLS, XLSX

(Submitter supplied) Breeding day-neutral strawberry (Fragaria x ananassa Duchesne) is pivotal to extend fruit-bearing season and increase the efficiency of production. However, genetic improvement of day-neutrality by the means of molecular marker technologies remains slow due to genome complexity of octoploid strawberry. This study employs an innovative approach by integrating the Subtracted Diversity Array (SDA) technology and Bulked Segregant Analysis (BSA) to facilitate the identification of molecular markers associated with day-neutrality in octoploid strawberry. more...

Organism:

Fragaria x ananassa

Type:

Genome variation profiling by array

Platform:

GPL20602

4 Samples

Download data: CSV, TXT

(Submitter supplied) Transcriptome Response of Strawberry (Fragaria × ananassa) cultivar Camarosa to Colletotrichum acutatum Infection.

Organism:

Fragaria x ananassa

Type:

Expression profiling by array

Platform:

GPL18483

3 Samples

Download data: GPR

(Submitter supplied) We used Illumina sequencing to investigate the global transcriptomic expression of hormonal pathway genes in ABA initiated strawberry receptacle ripening. Expression profiles of hormone synthetic and signaling genes further demonstrated the positive roles of ABA and GA, and the negative role of auxin in receptacle ripening. We also evaluated the transcript profiling of ethylene and JA pathway genes, and the results suggested that both ethylene and JA participated in receptacle ripening. more...

Organism:

Fragaria x ananassa

Type:

Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing; Other

Platform:

GPL15080

21 Samples

Download data: FASTA, TXT, XLSX

(Submitter supplied) To assess underlying metabolic processes and regulatory mechanisms during cold exposure of strawberry, integrative “omic” approaches were applied to F. ananassa ‘Korona’. Analysis of leaf tissue was emphasized because of its immediate and early responses in the cold acclimation processes. Levels of metabolites, proteins, and transcripts in tissues from plants grown at 20°C were compared to those following 1 to 10 days of cold exposure. more...

Organism:

Arabidopsis thaliana; Fragaria x ananassa

Type:

Expression profiling by array

Platform:

GPL11051

8 Samples

Download data: GPR

(Submitter supplied) To identify miRNAs involved in senescence of strawberry fruit, two independent small RNA libraries and one degradome library from strawberry fruits stored at 20 °C for 0 and 24 h were constructed. A total of 18,759,735 and 20,293,492 mappable small RNA sequences were generated in the two small RNA libraries, respectively, and 88 known and 1224 new candidate miRNAs were obtained. Among them, 94 miRNAs were up-regulated and 64 were down-regulated in the senescence of strawberry fruit. more...

Organism:

Fragaria x ananassa

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL17309

3 Samples

Download data: TXT, XLS