GEO DataSets

(Submitter supplied) Next-generation sequencing (NGS) was performed to identify genes changed in tea plant cultivar Zhongcha 108 upon Colletotrichum camelliae infection. The goal of the work is to find interesting genes involved in tea plant in response to fungi infection. The object is to reveal the molecular mechanism of tea plant defense.

Organism:

Camellia sinensis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL23285

9 Samples

Download data: XLSX

(Submitter supplied) The green tea made from the etiolation shoots and leaves have fresh taste and strong aroma. ‘Zhonghuang 2 (ZH2) is a natural etiolation mutant and its shoots are etiolation in spring and turn green in summer. Two conditions including the relative high temperature (LT, 26 / 22oC) and the relative low temperature (LT, 18 / 14oC) were to find out the etiolated reason of ZH2. We confirmed ZH2 was a low-temperature sensitive tea plant cultivar, and the reason of shoots etiolation at LT was the reduction of stacked grana, which could cause the lack of photoreaction. more...

Organism:

Camellia sinensis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL32046

6 Samples

Download data: TXT

(Submitter supplied) The microRNAs reveal the molecular mechanism involved in the regulation of leaf development in Xinyang Maojian green tea.

Organism:

Camellia sinensis

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL32046

12 Samples

Download data: TXT

(Submitter supplied) In order to study the differential expression of cold-tolerant variety SCZ and cold-sensitive variety YH9 during cold acclimation, we analyzed transcriptome and metabolome and found that the biosynthesis of amino acids may determine the difference of cold resistance of tea plant.

Organism:

Camellia sinensis var. assamica; Camellia sinensis

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL32768 GPL23285

18 Samples

Download data: FA, XLSX

(Submitter supplied) An increasing amount of evidence attest that the tea made by albino tea cultivars processes characteristic aroma and taste, which has been considered as a new potential product in the market. Therefore, flavor formation mechanism of albino tea cultivars have drawn exceeding attention from researchers. In this study, transcriptome, metabolomics, and whole-genome bisulfite sequencing (WGBS) were employed to investigate shading effects on leaf color conversion and biosynthesis of three major secondary metabolites in the Albino tea cultivar ‘Yujinxiang’. more...

Organism:

Camellia sinensis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL23285

12 Samples

Download data: TXT

(Submitter supplied) HIPP (heavy metal associated isoprenylated plant protein) is a group of metal-binding metallochaperones, which plays crucial roles in metal homeostasis and detoxification. Up to now, little information of CsHIPP family genes in C. sinensis has been reported. In present study, a total of 56 CsHIPP genes from C. sinensis were identified, which were unevenly distributed on 15 chromosomes. The CsHIPP family genes were divided into five groups based on the topology of phylogenetic tree and identified AtHIPPs and OsHIPPs. more...

Organism:

Camellia sinensis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL25554

15 Samples

Download data: GTF, TXT

(Submitter supplied) Purpose: We investigated root foraging strategies for K of tea plants using a multi-layer split-root system by RNA-seq. Methods: One-year old tea cuttings were cultivated with the roots evenly planted on the two sides of the split root hydroponic box with a root canal. Three treatments were included to simulate the heterogeneous and homogeneous K environments. After 5d treatment, the roots on the two sides of the split root hydroponic box were collected separately and the RNA sequencing were analyzed by the Illumina Hiseq (2500, Illumina, San Diego, CA). more...

Organism:

Camellia sinensis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL32046

24 Samples

Download data: FA, GTF, TXT

(Submitter supplied) To investigate the relationships between hormones and critical components in tea leaves during withering process, we detected the alterations of abscisic acid (ABA), salicylic acid (SA), and jasmonic acid (JA), catechins, theanine, and caffeine in tea leaves withered at different time points from 0 to 24 hours. The content of ABA increased from 0h to 9h and decreased thereafter and JA content continuous increased, however, SA content was no significantly changes during withering process. more...

Organism:

Camellia sinensis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL23285

12 Samples

Download data: TXT

(Submitter supplied) For developing the more SNPs and new high-density genetic linkage map of tea plant, two parents and their 326 progenies and 147 registered tea cultivars was sequencing by newly developed Affymetrix Axiom genotyping technology

Organism:

Camellia sinensis

Type:

SNP genotyping by SNP array

Platform:

GPL30500

475 Samples

Download data: CEL, XLSX

(Submitter supplied) Anthracnose, caused by Colletotrichum gloeosporioides is one of the most serious diseases of tea plant [Camellia sinensis (L.) O. Kuntze]. MicroRNAs are key modulators of gene expression in defense responses and plant immunity; although, foliar application of exogenous caffeine in anthracnose disease control management has proven to be effective, miRNA-mediated regulatory mechanisms underlying caffeine-induced plant defense response to C. more...

Organism:

Camellia sinensis

Type:

Other; Non-coding RNA profiling by high throughput sequencing

Platform:

GPL25554

32 Samples

Download data: XLSX

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Camellia sinensis

Type:

Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing; Other

Platforms:

GPL25554 GPL19224

20 Samples

Download data

(Submitter supplied) MicroRNAs (miRNAs) are a type of small non-coding RNAs, which play important roles in plant growth, development and stress responses. Tea (Camellia sinensis) prepared from tea tree is the oldest and most popular nonalcoholic beverages in the world, and has large economic, medicinal and cultural significance. Nevertheless, there are a few studies on the miRNAs and their functions in Camellia sinensis. more...

Organism:

Camellia sinensis

Type:

Other

Platform:

GPL25554

2 Samples

Download data: XLSX

(Submitter supplied) MicroRNAs (miRNAs) are a type of small non-coding RNAs, which play important roles in plant growth, development and stress responses. Tea (Camellia sinensis) prepared from tea tree is the oldest and most popular nonalcoholic beverages in the world, and has large economic, medicinal and cultural significance. Nevertheless, there are a few studies on the miRNAs and their functions in Camellia sinensis. more...

Organism:

Camellia sinensis

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL19224

9 Samples

Download data: XLSX

(Submitter supplied) MicroRNAs (miRNAs) are a type of small non-coding RNAs, which play important roles in plant growth, development and stress responses. Tea (Camellia sinensis) prepared from tea tree is the oldest and most popular nonalcoholic beverages in the world, and has large economic, medicinal and cultural significance. Nevertheless, there are a few studies on the miRNAs and their functions in Camellia sinensis. more...

Organism:

Camellia sinensis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL19224

9 Samples

Download data: XLSX

(Submitter supplied) To identify the putative genes involved in theacrine biosynthesis in tea plant, we carried out comparative transcriptome analysis of Kucha (K6 and K11) and conventional varieties (YH 9 and QX 1).

Organism:

Camellia sinensis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL23285

12 Samples

Download data: TXT

(Submitter supplied) Senescence is initiated immediately in harvested tea leaves, and leads to physiological and biochemical changes, and could affects the final tea products. In the present work, we investigated the relationship between hormones and critical components in harvested tea leaves before withering, changes in hormones including abscisic acid (ABA), salicylic acid (SA), jasmonic acid (JA), and critical components like catechins, theanine, and caffeine were analyzed. more...

Organism:

Camellia sinensis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL23285

9 Samples

Download data: TXT

(Submitter supplied) Anthracnose disease is caused by Colletotrichum gloeosporioides, and is common in leaves of the tea plant Camellia sinensis. MicroRNAs (miRNAs) have been known as key modulators of gene expression in defense responses; however, the role of miRNAs in tea plant during defensive responses to C. gloeosporioides remains unexplored. Six miRNA sequencing data sets and two degradome data sets were generated from C. more...

Organism:

Camellia sinensis

Type:

Non-coding RNA profiling by high throughput sequencing; Other

Platforms:

GPL20107 GPL25554

8 Samples

Download data: TXT

(Submitter supplied) In this study, we performed deep sequencing and bioinformatics analyses of tea plant leaves to identify and characterize known and novel miRNAs. A total of 26,876,261 raw reads were produced from 2 libraries. We detected 422 known miRNAs belonging to 125 families, and 68 putative novel miRNAs.

Organism:

Camellia sinensis

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL19477

2 Samples

Download data: FA, TXT

(Submitter supplied) micro RNA identification of tea plant

Organism:

Camellia sinensis

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL20107

2 Samples

Download data: XLS

(Submitter supplied) Recently, intensive global climate change has become a major factor impacting plant survival during the winter. Freezing cold temperatures during the winter and abnormal temperature fluctuations during the winter and early spring are the most harmful ambient factors threatening tea plant winter survival and currently cause marked economic losses in tea production. In this study, by simulating natural climate change, we established cold acclimation (CA) and rapid cold stress (after CA) conditions to comprehensively investigate the transcriptome changes involved in CA and rapid cold stress. more...

Organism:

Camellia sinensis

Type:

Expression profiling by array

Platform:

GPL24061

24 Samples

Download data: TXT