txid91827[Organism:exp] - GEO DataSets

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Select item 2002531091.

Transcript profiling of wrinkled1 mutant embryos in Arabidopsis thaliana

(Submitter supplied) Understanding the mechanisms of transcriptional regulation for genes involved with FA biosynthesis and TAG accumulation in seeds can represent an important step in the development of crops with increased oil content. Among well studied transcription factors (TFs), WRINKLED1 (WRI1), a member of the APETALA2 (AP2) family of TFs, has been characterized as a central regulator of FA biosynthesis in seeds of many plant species. more...

Organism:: Arabidopsis thaliana

Type:: Expression profiling by high throughput sequencing

Platform:: GPL26208
6 Samples

Download data: TXT

Series

Accession:: GSE253109

ID:: 200253109

Select item 2002531072.

mRNA changes following induction of GmWRI1 activity in Arabidopsis leaf mesophyll protoplasts

Organism:: Arabidopsis thaliana

Type:: Expression profiling by high throughput sequencing

Platform:: GPL26208
6 Samples

Download data: TXT

Series

Accession:: GSE253107

ID:: 200253107

Select item 2002531043.

Identification of GLYMA.08G227700 binding sites in soybean cotyledon stage embryos

(Submitter supplied) To dissect the gene regulatory networks operating during soybean embryo development, we identified the binding sites genome-wide for transcription factor GLYMA.08G227700 in early maturation embryos using ChIP-seq.

Organism:: Glycine max

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL28801
4 Samples

Download data: NARROWPEAK

Series

Accession:: GSE253104

ID:: 200253104

Select item 2002482244.

Dissecting the temporal genetic networks programming soybean embryo development from embryonic morphogenesis to post-germination

(Submitter supplied) To understand the molecular events underlying seed desiccation and germination, we performed transcriptome analysis of soybean (Glycine max) embryos at three seed developmental stages (early, mid and late desiccation), mature dry seeds, and three germination stages (3, 16 and 27 hour-after-imbibition).

Organism:: Glycine max

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL26488 GPL28801
46 Samples

Download data: TXT

Series

Accession:: GSE248224

ID:: 200248224

Select item 2002792115.

The combination of a microbial and a non-microbial biostimulant increases yield in lettuce (Lactuca sativa) under salt stress conditions by up-regulating cytokinin biosynthesis

(Submitter supplied) Salinization poses a significant challenge in agriculture, exacerbated by anthropogenic global warming. Biostimulants, derived from living microorganisms or natural extracts, have emerged as valuable tools for conventional and organic agriculture. However, our understanding of the molecular mechanisms underlying the effects of biostimulants is very limited, especially in crops under real cultivation conditions. more...

Organism:: Lactuca sativa

Type:: Expression profiling by high throughput sequencing

Platform:: GPL34979
72 Samples

Download data: TSV

Series

Accession:: GSE279211

ID:: 200279211

PubMed

Select item 2002779776.

Jasmonic acid signaling and glutathione coordinate plant recovery from high light stress

(Submitter supplied) High light (HL)-induced chloroplast retrograde signaling originates from the photosynthetic apparatus and regulates nuclear gene expression to enhance photoprotection and coordinate cell metabolism. Here, we analyzed the transcript profiles and accumulation of reactive oxygen species (ROS), stress hormones and small molecule antioxidants to investigate the signaling mechanisms operating under HL stress, and in particular during plant recovery (R) from stress under growth conditions. more...

Organism:: Arabidopsis thaliana

Type:: Expression profiling by high throughput sequencing

Platform:: GPL17311
15 Samples

Download data: TXT

Series

Accession:: GSE277977

ID:: 200277977

Select item 2002631137.

Genome-wide binding of FRUITFULL complexes (FUL-SOC1, FUL-AG-SEP3, FUL, FUL-AG, FUL-SEP3) determined by DNA-affinity purification sequencing (DAP-seq)

(Submitter supplied) With this experiment, our objective is to identify the binding sites of MADS-domain protein complexes and determine if they exhibit binding to different targets or with differing affinities, which could be a mechanism to acquire target gene specificity. Specifically, we aim to investigate this phenomenon for the tetramers FUL-SOC1 and FUL-AG-SEP3, as they are enriched in different tissues, thus likely regulating distinct functions. more...

Organism:: Arabidopsis thaliana

Type:: Other

Platform:: GPL26208
18 Samples

Download data: BED, BIGWIG

Series

Accession:: GSE263113

ID:: 200263113

Select item 2002759838.

Genome-wide Identification of Lipoxygenases in Luffa aegyptiaca and Functional Characterization in Response to Abiotic Stress

(Submitter supplied) RNA-seq of four Luffa aegyptiaca samples in response to heat stress

Organism:: Luffa aegyptiaca

Type:: Expression profiling by high throughput sequencing

Platform:: GPL34853
4 Samples

Download data: MATRIX

Series

Accession:: GSE275983

ID:: 200275983

Select item 2002462929.

Identification of exosome-like nanovesicle (ENV) associated miRNAs in edible plants

(Submitter supplied) MicroRNAs (miRNAs) are small non-coding RNAs between 18-23nts in size which regulate the translation and stability of target mRNAs. miRNAs are present in dietary plants and are conventionally thought to be degraded during the gastrointestinal digestion process. Recent reports suggest that a few dietary microRNAs may exhibit resistance to this process, enter systemic circulation and exert biological effects on animal physiology, currently known as cross-kingdom regulation. more...

Organism:: Glycine max; Allium sativum; Curcuma longa; Emblica officinalis

Type:: Non-coding RNA profiling by high throughput sequencing

4 related Platforms
8 Samples

Download data: XLSX

Series

Accession:: GSE246292

ID:: 200246292

Select item 20027883310.

Trans-generational adaptation to maternal climate through hormone transport in plants [bulk RNA-seq]

(Submitter supplied) Whether and how organisms can inherit environmental information from their parents is a major question in evolutionary theory. Plants have evolved to link reproductive development to seasonal environmental cues and seed dormancy is highly contingent on the environmental temperature during seed set, although the mechanism by which seeds acquire seasonal timing information is unclear. Here we show that loss of maternal like heterochromatin protein 1 (LHP1) causes an inability of progeny seeds to sense temperature and that this is linked mechanistically to reduced ABA levels in seeds and hyperaccumulation of free nitrate. more...

Organism:: Arabidopsis thaliana

Type:: Expression profiling by high throughput sequencing

Platform:: GPL28290
12 Samples

Download data: CSV

Series

Accession:: GSE278833

ID:: 200278833

Select item 20027854411.

RNA half-life regulation reveals countercyclical regulation of buffered RNAs and RNAs undergoing changes in abundance

(Submitter supplied) mRNA abundances are regulated by the opposing forces of transcription and decay, and yet how decay contributes to mRNA abundance regulation is largely unexplored. We addressed this question using genome-wide data on mRNA rates of abundance change, half-lives, and transcription rates of leaf cells responding to a transdifferentiation stimulusulus. Half-life regulation was common (22% of mRNAs underwent changes in half-life), but RNA abundance regulation by decay alone or by decay that supported transcriptional regulation was rare. more...

Organism:: Arabidopsis thaliana

Type:: Expression profiling by high throughput sequencing

Platform:: GPL17639
24 Samples

Download data: CSV

Series

Accession:: GSE278544

ID:: 200278544

Select item 20027854312.

RNA half-life regulation reveals countercyclical regulation of buffered RNAs and RNAs undergoing changes in abundance [trim-Qfilt]

Organism:: Arabidopsis thaliana

Type:: Expression profiling by high throughput sequencing

Platform:: GPL26208
30 Samples

Download data: TXT

Series

Accession:: GSE278543

ID:: 200278543

Select item 20012680913.

AtMBD9 ChIP-seq

(Submitter supplied) Using ChIP-seq to study the enrichment of AtMBD9 in Col-0 control plants and AtMBD9-3xMYC/atmbd9-2 transgenic line

Organism:: Arabidopsis thaliana

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL17639
8 Samples

Download data: BEDGRAPH

Series

Accession:: GSE126809

ID:: 200126809

SRA Run Selector

Select item 20012237314.

Whole genome bisulfite sequencing of arp6-5 and pie1-7 Arabidopsis mutants

(Submitter supplied) Using whole genome bisulfite sequencing to provide single-base resolution of DNA methylation status in arp6-5 and pie1-7 mutant

Organism:: Arabidopsis thaliana

Type:: Methylation profiling by high throughput sequencing

Platform:: GPL17639
2 Samples

Download data: TXT

Series

Accession:: GSE122373

ID:: 200122373

SRA Run Selector

Select item 20007884615.

Whole genome bisulfite sequencing of hdp1-1 and hdp2-1 mutants (both with 35S-SUC2 transgene)

(Submitter supplied) Using whole genome bisulfite sequencing to provide single-base resolution of DNA methylation status in hdp1-1 and hdp2-1 mutants

Organism:: Arabidopsis thaliana

Type:: Methylation profiling by high throughput sequencing

Platform:: GPL13222
2 Samples

Download data: WIG

Series

Accession:: GSE78846

ID:: 200078846

SRA Run Selector

Select item 20007434916.

Anti-silencing mutants

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Arabidopsis thaliana

Type:: Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing

Platform:: GPL17639
11 Samples

Download data: WIG

Series

Accession:: GSE74349

ID:: 200074349

Select item 20007434817.

H2A.Z ChIP-seq of WT, ros1-14, idm1-9, arp6-5 and pie1-7

(Submitter supplied) Using ChIP-seq to study the deposition of H2A.Z in different anti-silencing mutants

Organism:: Arabidopsis thaliana

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL17639
5 Samples

Download data: WIG

Series

Accession:: GSE74348

ID:: 200074348

SRA Run Selector

Select item 20007434718.

MethlyC-Seq of WT (35S-SUC2) and anti-silencing mutants (arp6-5, pie1-7, h2a.z-2, idm1-9 and ros1-14)

(Submitter supplied) Using MethylC-Seq to provide single-base resolution of DNA methylation status in 35S-SUC2 WT and anti-silencing mutants( arp6-5, pie1-7, h2a.z-2, idm1-9 and ros1-14）

Organism:: Arabidopsis thaliana

Type:: Methylation profiling by high throughput sequencing

Platform:: GPL17639
6 Samples

Download data: WIG

Series

Accession:: GSE74347

ID:: 200074347

SRA Run Selector

Select item 20026851119.

Evolutionary Conservation and Functional Role of the SWI/SNF Complex Protein BDH in Arabidopsis: Insights into Catalytic Subcomplex Stability and Biological Implications [RNA-Seq]

(Submitter supplied) The SWI/SNF complexes play crucial roles in chromatin remodeling, with the protein BDH emerging as a key component in Arabidopsis. Through evolutionary analysis, we demonstrate the conservation of BDH function across mammals, yeast, and plants. Our study reveals that BDH is integral to the stability of the catalytic subcomplex within SWI/SNF assemblies. Furthermore, we elucidate the biological and molecular implications of BDH in Arabidopsis, highlighting its involvement in nucleosomal occupancy regulation. more...