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1.

Mammalian Methylation Consortium

(Submitter supplied) The Mammalian Methylation Consortium aimed to characterize the relationship between cytosine methylation levels and a) species characteristics such as maximum lifespan and b) individual sample characteristics such as age, sex, tissue type. Both supervised machine learning approaches and unsupervised machine learning approaches were applied to the data as described in the citations. To facilitate comparative analyses across species, the mammalian methylation consortium applied a single measurement platform (the mammalian methylation array, GPL28271) to n=15216 DNA samples derived from 70 tissue types of 348 different mammalian species (331 eutherian-, 15 marsupial-, and 2 monotreme species). more...
Organism:
Tachyglossus aculeatus; Sarcophilus harrisii; Macropus giganteus; Tamandua mexicana; Dasypus novemcinctus; Erinaceus europaeus; Atelerix albiventris; Sorex hoyi; Pteropus poliocephalus; Pteropus hypomelanus; Rousettus aegyptiacus; Phyllostomus hastatus; Lemur catta; Otolemur crassicaudatus; Loris tardigradus; Callithrix jacchus; Papio hamadryas; Canis lupus familiaris; Ursus americanus; Martes americana; Odobenus rosmarus divergens; Elephas maximus; Loxodonta africana; Rhinoceros unicornis; Procavia capensis; Sus scrofa domesticus; Capreolus capreolus; Cervus elaphus; Aepyceros melampus; Ochotona princeps; Peromyscus leucopus; Mus minutoides; Rattus norvegicus; Rattus rattus; Cavia porcellus; Myocastor coypus; Heterocephalus glaber; Monodelphis domestica; Choloepus didactylus; Eptesicus fuscus; Chaetophractus villosus; Vombatus ursinus; Galago moholi; Acinonyx jubatus; Dromiciops gliroides; Eulemur mongoz; Suricata suricatta; Phoca groenlandica; Ictidomys tridecemlineatus; Glaucomys sabrinus; Lepus americanus; Mesoplodon bidens; Sylvilagus nuttallii; Nyctalus noctula; Castor canadensis; Trachypithecus francoisi; Cynopterus brachyotis; Lynx rufus; Plecotus auritus; Ctenomys steinbachi; Sorex minutissimus; Sorex tundrensis; Sorex trowbridgii; Nanger dama; Tragelaphus eurycerus; Tragelaphus spekii; Gazella leptoceros; Tupaia tana; Microtus ochrogaster; Propithecus diadema; Cyclopes didactylus; Eulemur flavifrons; Equus quagga; Marmota flaviventris; Parascalops breweri; Connochaetes taurinus albojubatus; Eozapus setchuanus; Phodopus roborovskii; Eulemur sanfordi; Tamias townsendii; Rhinopoma hardwickii; Ochotona dauurica; Ochotona hyperborea; Ochotona pallasi; Cavia tschudii; Myotis thysanodes; Myotis yumanensis; Neophoca cinerea; Zapus princeps; Tolypeutes matacus; Myotis vivesi; Tupaia longipes; Paraechinus aethiopicus; Microtus guentheri; Smutsia temminckii; Mirza zaza; Alticola semicanus; Lasiopodomys brandtii; Neogale vison; Crocidura cyanea; Microtus maximowiczii; Micaelamys namaquensis; Clethrionomys gapperi; Galeopterus variegatus; Sylvilagus brasiliensis; Cephalorhynchus hectori hectori; Cephalorhynchus hectori maui; Paraechinus hypomelas; Microgale thomasi; Cervus canadensis; Alexandromys oeconomus; Didelphis virginiana; Didelphis marsupialis; Notamacropus agilis; Macropus fuliginosus; Choloepus hoffmanni; Amblysomus hottentotus; Artibeus jamaicensis; Varecia variegata; Cheirogaleus medius; Gorilla gorilla; Pongo pygmaeus; Homo sapiens; Crocuta crocuta; Phoca vitulina; Phocoena phocoena; Delphinapterus leucas; Physeter catodon; Diceros bicornis; Odocoileus virginianus; Muntiacus vaginalis; Bos taurus; Tragelaphus oryx; Sylvilagus floridanus; Peromyscus maniculatus; Microtus pennsylvanicus; Mus musculus; Cryptomys hottentotus; Hapalemur griseus; Nanger granti; Balaena mysticetus; Molossus molossus; Nycticeius humeralis; Elephantulus edwardii; Sylvilagus audubonii; Propithecus tattersalli; Nannospalax ehrenbergi; Sciurus niger; Sorex cinereus; Tupaia belangeri; Cavia aperea; Phascolarctos cinereus; Ochotona rufescens; Sorex palustris; Cabassous unicinctus; Myotis myotis; Aplodontia rufa; Pipistrellus pipistrellus; Saccopteryx bilineata; Addax nasomaculatus; Antidorcas marsupialis; Kobus megaceros; Chlorocebus sabaeus; Ctenomys opimus; Neomys fodiens; Sorex vagrans; Eidolon helvum; Pteropus rodricensis; Okapia johnstoni; Phyllostomus discolor; Lagenorhynchus obliquidens; Callospermophilus saturatus; Xanthonycticebus pygmaeus; Cephalorhynchus commersonii; Cuniculus paca; Myotis brandtii; Myotis nattereri; Elephantulus myurus; Rhabdomys pumilio; Pteropus vampyrus; Apodemus uralensis; Condylura cristata; Tamiasciurus douglasii; Neurotrichus gibbsii; Rhombomys opimus; Rhinolophus alcyone; Myotis evotis; Meriones rex; Hemicentetes semispinosus; Microgale cowani; Dendrohyrax arboreus; Propithecus coquereli; Hipposideros ruber; Galea musteloides leucoblephara; Alexandromys mongolicus; Nannospalax galili; Lasiopodomys gregalis; Osphranter robustus; Bradypus variegatus; Echinops telfairi; Blarina brevicauda; Desmodus rotundus; Pan troglodytes; Lycaon pictus; Vulpes vulpes; Felis catus; Zalophus californianus; Orcinus orca; Tursiops truncatus; Balaenoptera borealis; Balaenoptera musculus; Trichechus manatus; Equus grevyi; Sus scrofa; Giraffa camelopardalis; Capra hircus; Ovis aries; Tragelaphus strepsiceros; Oryctolagus cuniculus; Marmota monax; Cricetulus griseus; Ondatra zibethicus; Acomys cahirinus; Apodemus sylvaticus; Hystrix cristata; Bathyergus janetta; Georychus capensis; Eulemur coronatus; Eulemur fulvus; Vicugna pacos; Eulemur macaco; Microcebus murinus; Chinchilla lanigera; Erethizon dorsatum; Eumetopias jubatus; Caenolestes fuliginosus; Peromyscus eremicus; Peromyscus polionotus; Eulemur fulvus collaris; Lepus californicus; Tamandua tetradactyla; Talpa occidentalis; Myotis lucifugus; Rhinolophus ferrumequinum; Arvicanthis niloticus; Sorex caecutiens; Sorex isodon; Litocranius walleri; Scalopus aquaticus; Equus asinus somalicus; Ceratotherium simum simum; Callospermophilus lateralis; Mustela altaica; Microtus fortis; Napaeozapus insignis; Apodemus peninsulae; Ochotona alpina; Scapanus orarius; Hemiechinus auritus; Orientallactaga sibirica; Rhynchonycteris naso; Gerbillus nanus; Tupaia gracilis; Sylvilagus bachmani; Alticola barakshin; Asellia tridens; Nothocricetulus migratorius; Ornithorhynchus anatinus; Notamacropus eugenii; Osphranter rufus; Suncus murinus; Tadarida brasiliensis; Antrozous pallidus; Nycticebus coucang; Perodicticus potto; Macaca mulatta; Canis latrans; Mustela putorius furo; Panthera leo; Panthera tigris; Puma concolor; Delphinus delphis; Megaptera novaeangliae; Equus caballus; Orycteropus afer; Tragelaphus imberbis; Tamiasciurus hudsonicus; Cricetulus longicaudatus; Mesocricetus auratus; Meriones unguiculatus; Cricetomys gambianus; Galea musteloides; Hydrochoerus hydrochaeris; Bathyergus suillus; Lagenorhynchus albirostris; Macroscelides proboscideus; Sciurus carolinensis; Daubentonia madagascariensis; Eulemur rubriventer; Oreamnos americanus; Enhydra lutris; Hippotragus equinus; Hippotragus niger; Globicephala macrorhynchus; Apodemus agrarius; Carollia perspicillata; Peromyscus californicus; Tamias striatus; Steno bredanensis; Phodopus campbelli; Hylomys suillus; Urocitellus columbianus; Jaculus jaculus; Callithrix geoffroyi; Mustela frenata; Ctenomys lewisi; Sorex roboratus; Tamias amoenus; Tragelaphus angasii; Chrysocyon brachyurus; Nanger soemmerringii; Eudorcas thomsonii; Dipus sagitta; Tursiops aduncus; Tenrec ecaudatus; Neotoma cinerea; Microtus richardsoni; Pteropus giganteus; Pteropus pumilus; Mops pumilus; Meriones libycus; Setifer setosus; Ellobius talpinus; Cricetulus barabensis; Suncus varilla; Lasiopodomys mandarinus; Aonyx cinereus; Myodes rufocanus; Varecia rubra; Leptonycteris yerbabuenae; Eulemur rufus; Fukomys damarensis; Eulemur albifrons; Gerbillus cheesmani; Microgale drouhardi; Notamacropus rufogriseus; Nesogale talazaci
Type:
Methylation profiling by array
Platform:
GPL28271
15043 Samples
Download data: CSV, DOCX, IDAT
Series
Accession:
GSE223748
ID:
200223748
2.

Genome Methylation Predicts Age and Longevity of Bats

(Submitter supplied) An Infinium microarray platform (GPL28271, HorvathMammalMethylChip40) was used to generate DNA methylation data from several tissues in several bat species. Tissues: skin (wing punches), liver, brain, skeletal muscle.
Organism:
Artibeus jamaicensis; Antrozous pallidus; Homo sapiens; Mus musculus; Molossus molossus; Nycticeius humeralis; Myotis myotis; Saccopteryx bilineata; Phyllostomus discolor; Pteropus vampyrus; Pteropus poliocephalus; Pteropus hypomelanus; Phyllostomus hastatus; Eptesicus fuscus; Nyctalus noctula; Cynopterus brachyotis; Rhinolophus ferrumequinum; Myotis vivesi; Rousettus aegyptiacus; Desmodus rotundus; Rattus norvegicus; Myotis lucifugus; Rhynchonycteris naso; Tadarida brasiliensis; Carollia perspicillata; Eidolon helvum; Pteropus rodricensis; Myotis brandtii; Pteropus giganteus; Pteropus pumilus; Leptonycteris yerbabuenae
Type:
Methylation profiling by array
Platform:
GPL28271
908 Samples
Download data: DOCX, IDAT, TXT
Series
Accession:
GSE164127
ID:
200164127
3.

Gene Expression Defines Natural Changes in Mammalian Lifespan

(Submitter supplied) Mammals differ more than hundred fold in maximum lifespan, which can be altered in either direction during evolution, but the molecular basis for natural changes in longevity is not understood. Divergent evolution of mammals also led to extensive changes in gene expression within and between lineages. To understand the relationship between lifespan and variation in gene expression, we carried out RNA-seq-based gene expression analyses of liver, kidney and brain of 33 diverse species of mammals. more...
Organism:
Sus scrofa; Mus musculus; Petaurus breviceps; Murina leucogaster; Tadarida brasiliensis; Ursus americanus; Meles meles; Equus caballus; Mesocricetus auratus; Meriones unguiculatus; Erinaceus europaeus; Suncus murinus; Canis lupus familiaris; Peromyscus leucopus; Acomys cahirinus; Cavia porcellus; Tamias sibiricus; Chlorocebus aethiops; Felis catus; Bos taurus; Capra hircus; Oryctolagus cuniculus; Rattus norvegicus
Type:
Expression profiling by high throughput sequencing
23 related Platforms
141 Samples
Download data: GTF, TXT
Series
Accession:
GSE43013
ID:
200043013
4.

Illumina HiSeq 2000 (Tadarida brasiliensis)

Organism:
Tadarida brasiliensis
Download data
Platform
Accession:
GPL34381
ID:
100034381
5.

Illumina Genome Analyzer IIx (Tadarida brasiliensis)

Organism:
Tadarida brasiliensis
1 Series
3 Samples
Download data
Platform
Accession:
GPL16408
ID:
100016408
6.

genomic DNA from Mexican free-tailed bat Skin 203877620066_R02C02

Organism:
Tadarida brasiliensis
Source name:
Skin
Platform:
GPL28271
Series:
GSE223748
Download data: IDAT
Sample
Accession:
GSM6983742
ID:
306983742
7.

genomic DNA from Mexican free-tailed bat Skin 203675320050_R04C01

Organism:
Tadarida brasiliensis
Source name:
Skin
Platform:
GPL28271
Series:
GSE223748
Download data: IDAT
Sample
Accession:
GSM6983726
ID:
306983726
8.

genomic DNA from Mexican free-tailed bat Skin 203675320049_R06C02

Organism:
Tadarida brasiliensis
Source name:
Skin
Platform:
GPL28271
Series:
GSE223748
Download data: IDAT
Sample
Accession:
GSM6983722
ID:
306983722
9.

genomic DNA from Mexican free-tailed bat Skin 203675320049_R05C02

Organism:
Tadarida brasiliensis
Source name:
Skin
Platform:
GPL28271
Series:
GSE223748
Download data: IDAT
Sample
Accession:
GSM6983721
ID:
306983721
10.

genomic DNA from Mexican free-tailed bat Skin 203675320049_R04C02

Organism:
Tadarida brasiliensis
Source name:
Skin
Platform:
GPL28271
Series:
GSE223748
Download data: IDAT
Sample
Accession:
GSM6983720
ID:
306983720
11.

genomic DNA from Mexican free-tailed bat Skin 203675320049_R03C01

Organism:
Tadarida brasiliensis
Source name:
Skin
Platform:
GPL28271
Series:
GSE223748
Download data: IDAT
Sample
Accession:
GSM6983715
ID:
306983715
12.

genomic DNA from Mexican free-tailed bat Skin 203675320049_R02C01

Organism:
Tadarida brasiliensis
Source name:
Skin
Platform:
GPL28271
Series:
GSE223748
Download data: IDAT
Sample
Accession:
GSM6983714
ID:
306983714
13.

genomic DNA from Mexican free-tailed bat Skin 203675320052_R06C02

Organism:
Tadarida brasiliensis
Source name:
Skin
Platform:
GPL28271
Series:
GSE223748
Download data: IDAT
Sample
Accession:
GSM6983712
ID:
306983712
14.

genomic DNA from Mexican free-tailed bat Skin 203675320052_R03C02

Organism:
Tadarida brasiliensis
Source name:
Skin
Platform:
GPL28271
Series:
GSE223748
Download data: IDAT
Sample
Accession:
GSM6983709
ID:
306983709
15.

genomic DNA from Mexican free-tailed bat Skin 203675320052_R02C02

Organism:
Tadarida brasiliensis
Source name:
Skin
Platform:
GPL28271
Series:
GSE223748
Download data: IDAT
Sample
Accession:
GSM6983708
ID:
306983708
16.

genomic DNA from Mexican free-tailed bat Skin 203675320052_R01C02

Organism:
Tadarida brasiliensis
Source name:
Skin
Platform:
GPL28271
Series:
GSE223748
Download data: IDAT
Sample
Accession:
GSM6983707
ID:
306983707
17.

genomic DNA from Mexican free-tailed bat Skin 203675320052_R04C01

Organism:
Tadarida brasiliensis
Source name:
Skin
Platform:
GPL28271
Series:
GSE223748
Download data: IDAT
Sample
Accession:
GSM6983704
ID:
306983704
18.

genomic DNA from Mexican free-tailed bat Skin 203675320053_R03C02

Organism:
Tadarida brasiliensis
Source name:
Skin
Platform:
GPL28271
Series:
GSE223748
Download data: IDAT
Sample
Accession:
GSM6983697
ID:
306983697
19.

genomic DNA from Mexican free-tailed bat Skin 203675320053_R05C01

Organism:
Tadarida brasiliensis
Source name:
Skin
Platform:
GPL28271
Series:
GSE223748
Download data: IDAT
Sample
Accession:
GSM6983693
ID:
306983693
20.

genomic DNA from Mexican free-tailed bat Skin 203675320053_R02C01

Organism:
Tadarida brasiliensis
Source name:
Skin
Platform:
GPL28271
Series:
GSE223748
Download data: IDAT
Sample
Accession:
GSM6983690
ID:
306983690
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db=gds|term=txid9438[Organism:noexp]|query=1|qty=353|blobid=MCID_66751415ccfbad768f95d014|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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