GEO DataSets

(Submitter supplied) Transcriptomic analysis of the cells grown on biphenyl to stationary phase and those grown on biphenyl to mid-exponential phase

Organism:

Rhodococcus jostii RHA1

Type:

Expression profiling by array

Platform:

GPL7627

3 Samples

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(Submitter supplied) Transcroptomic analysis of the cells grown on pyruvate in the sterilized soil and those grown on pyruvate to mid-exponenyial phase in a liquid medium

Organism:

Rhodococcus jostii RHA1

Type:

Expression profiling by array

Platform:

GPL7627

4 Samples

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(Submitter supplied) Transcriptomic analysis of the cells grown on biphenyl in the sterilized soil and those grown on biphenyl to mid-exponential phase in a liquid medium

Organism:

Rhodococcus jostii RHA1

Type:

Expression profiling by array

Platform:

GPL7627

4 Samples

Download data

(Submitter supplied) Transcriptomic analysis of the cells grown on biphenyl on a filter placed on a minimal agar medium and those grown on biphenyl to mid-exponential phase in a liquid medium

Organism:

Rhodococcus jostii RHA1

Type:

Expression profiling by array

Platform:

GPL7627

3 Samples

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(Submitter supplied) Transcriptomic analysis of the cells grown on biphenyl to transition phase and those grown on biphenyl to mid-exponential phase

Organism:

Rhodococcus jostii RHA1

Type:

Expression profiling by array

Platform:

GPL7627

3 Samples

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(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Rhodococcus jostii RHA1

Type:

Expression profiling by array

Platform:

GPL3918

9 Samples

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(Submitter supplied) p-Hydroxycinnamates, such as p-coumarate and ferulate, are components of plant cell walls and have a number of commercial applications. Previously, we had shown that the soil Actinobacterium Rhodococcus jostii RHA1 (RHA1) grows on ferulate, catabolizing it via vanillate and the β-ketoadipate pathway. We used transcriptomics to identify genes in RHA1 that were specifically up-regulated during growth on ferulate. more...

Organism:

Rhodococcus jostii

Type:

Expression profiling by high throughput sequencing

Platform:

GPL18502

2 Samples

Download data: TXT

(Submitter supplied) Here we report the first transcriptomic analysis of a Gram-positive bacterium to desiccation. Filtered RHA1 cells incubated at either low relative humidity (20%), as an air drying treatment, or high relative humidity (100%), as a control, were transcriptionally profiled over a comprehensive time series. Keywords: stress response time course

Organism:

Rhodococcus jostii RHA1

Type:

Expression profiling by array

Platforms:

GPL3918 GPL6703

42 Samples

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(Submitter supplied) Oleaginous microorganisms have considerable potential for biofuel and commodity chemical production. Under nitrogen-limitation, Rhodococcus jostii RHA1 grown on benzoate, an analog of lignin depolymerization products, accumulated triacylglycerols (TAGs) to 55% of its dry weight during transition to stationary phase, with the predominant fatty acids being C16:0 and C17:0. Transcriptomic analyses of RHA1 grown under conditions of N-limitation and N-excess revealed 1,826 dysregulated genes. more...

Organism:

Rhodococcus jostii

Type:

Expression profiling by high throughput sequencing

Platform:

GPL21367

8 Samples

Download data: TXT

(Submitter supplied) Two cultures, one grown on cholic acid and the other on pyruvate.

Organism:

Rhodococcus jostii RHA1

Type:

Expression profiling by array

Platform:

GPL3918

3 Samples

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(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Rhodococcus jostii RHA1

Type:

Expression profiling by array

Dataset:

GDS2683

Platform:

GPL3918

6 Samples

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Analysis of Rhodococcus sp. strain RHA1 cells exposed to the pollutant phthalate (PTH) or terephthalate (TPA). Phthalate esters are used as plastic additives. RHA1 is able to degrade a wide range of aromatic compounds including PTH. Results provide insight into the ability of RHA1 to degrade TPA.

Organism:

Rhodococcus jostii RHA1

Type:

Expression profiling by array, log2 ratio, 2 agent sets

Platform:

GPL3918

Series:

GSE6685

6 Samples

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(Submitter supplied) We analyzed the transcriptional response of the actinomycete Rhodococcus aetherivorans I24 to biphenyl and polychlorinated biphenyls (PCBs). This species has not been extensively exposed to PCBs, as it was first isolated from a toluene contaminated aquifer, rather than a site contaminated with polychlorinated hydrocarbons. Using a microarray targeting 3524 genes, we assessed gene expression in minimal medium supplemented with various substrates (e.g. more...

Organism:

Rhodococcus aetherivorans

Type:

Expression profiling by array

Platform:

GPL8836

30 Samples

Download data: PAIR

(Submitter supplied) Analysis of gene expression in Pseudonocardia dioxanivorans strain CB1190 during growth with dioxane, glycolate or pyruvate.

Organism:

Pseudonocardia dioxanivorans CB1190

Type:

Expression profiling by array

Platform:

GPL14784

9 Samples

Download data: CEL

(Submitter supplied) three late exponential phase Rhodococcus sp. RHA1 propane-grown cultures compared to pyruvate-grown cultures Keywords: growth substrate

Organism:

Rhodococcus jostii RHA1

Type:

Expression profiling by array

Platform:

GPL3918

3 Samples

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