Similar studies for GEO DataSets (Select 200024089) - GEO DataSets

Links from GEO DataSets

Items: 20

Select item 2000240891.

Expression data from HPV(-) and HPV(+) squamous cell carcinoma cell lines

(Submitter supplied) Oncogenic human papillomaviruses (HPVs) are associated with nearly all carcinomas of the uterine cervix and have also become an increasingly important factor in the etiology of a subset of oropharyngeal tumors. HPV-associated head and neck cancers (HNSCCs) have a distinct risk profile and appreciate a prognostic advantage compared to HPV-negative HNSCC. We analyzed the genome-wide expression patterns in two HPV(+) and two HPV(-) squamous cell carcinoma (SCC) cell lines.

Organism:: Homo sapiens

Type:: Expression profiling by array

Platform:: GPL570
4 Samples

Download data: CEL

Series

Accession:: GSE24089

ID:: 200024089

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000240912.

Expression and methylation analyses of HPV(-) and HPV(+) squamous cell carcinoma cell lines

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Homo sapiens

Type:: Methylation profiling by array; Expression profiling by array; Methylation profiling by genome tiling array

9 related Platforms
36 Samples

Download data: CEL

Series

Accession:: GSE24091

ID:: 200024091

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000240903.

Genome-wide methylation analysis in HPV(-) and HPV(+) squamous cell carcinoma cell lines

(Submitter supplied) HPV-associated head and neck cancers (HNSCCs) have a distinct risk profile and appreciate a prognostic advantage compared to HPV-negative HNSCC. To assess the genome-wide methylation changes in HPV(+) and HPV(-) tumors, we analyzed DNA methylation and expression patterns in two HPV(+) and two HPV(-) cell lines. HPV(+) tumors have overall higher DNA methylation in genic and LINE1 regions than HPV(-) tumors, and polycomb repressive complex 2 (PRC2) targets tend to be much more highly methylated in HPV(+) cells.

Organism:: Homo sapiens

Type:: Methylation profiling by genome tiling array

7 related Platforms
28 Samples

Download data: BED, CEL, TXT

Series

Accession:: GSE24090

ID:: 200024090

PubMed Full text in PMC Similar studies

Select item 2000240874.

Epigenome analysis in HPV(-) and HPV(+) squamous cell carcinoma cell lines

(Submitter supplied) Human papillomavirus (HPV)-associated head and neck cancers (HNSCCs) have a distinct risk profile and appreciate a prognostic advantage compared to HPV-negative HNSCC. Promoter hypermethylation has been widely recognized as an important mechanism in the progression of HNSCC, but the extent to which this mechanism is consistent between HPV(+) and HPV(-) tumors is unknown. To assess the genome-wide methylation changes in HPV(+) and HPV(-) tumors, we analyzed DNA methylation and expression patterns in two HPV(+) and two HPV(-) cell lines. more...

Organism:: Homo sapiens

Type:: Methylation profiling by array

Platform:: GPL8490
4 Samples

Download data: TXT

Series

Accession:: GSE24087

ID:: 200024087

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000382715.

FF and FFPE HPV+ and HPV- HNSCC and HNSCC cell lines

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Homo sapiens

Type:: Methylation profiling by array

Platform:: GPL13534
72 Samples

Download data

Series

Accession:: GSE38271

ID:: 200038271

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000382686.

450k Analysis of 3 FF HPV+ and 3 FF HPV- HNSCC samples

(Submitter supplied) The methylation analysis of 3 FF HPV+ HNSCC samples and 21 FP HPV- HNSCC samples by Infinium HumanMethylation450 BeadChip

Organism:: Homo sapiens

Type:: Methylation profiling by array

Platform:: GPL13534
6 Samples

Download data: CSV

Series

Accession:: GSE38268

ID:: 200038268

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000382667.

450k Analysis of 42 FFPE HPV+ and HPV- HNSCC samples

(Submitter supplied) The methylation analysis of 21 FFPE HPV+ HNSCC samples and 21 FPPE HPV- HNSCC samples by Infinium HumanMethylation450 BeadChip

Organism:: Homo sapiens

Type:: Methylation profiling by array

Platform:: GPL13534
42 Samples

Download data: CSV

Series

Accession:: GSE38266

ID:: 200038266

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000382638.

Methylome Analysis of FF HPV+ and HPV- HNSCC samples

(Submitter supplied) The analysis of the 6 methylomes by MeDIP-Seq comprise 3 HPV+ HNSCC samples and 3 HPV- HNSCC samples

Organism:: Homo sapiens

Type:: Methylation profiling by high throughput sequencing

Platform:: GPL9115
6 Samples

Download data: WIG

Series

Accession:: GSE38263

ID:: 200038263

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000950369.

Unique DNA methylation signature in HPV-positive head and neck squamous cell carcinomas

(Submitter supplied) Background. Head and neck squamous cell carcinomas (HNSCCs) represent a heterogeneous group of cancers, for which human papilloma virus (HPV) infection is an emerging risk factor. Previous studies showed promoter hypermethylation in HPV(+) oropharyngeal cancers, but only few consistent target genes have been so far described and the evidence of a functional impact on gene expression is still limited. more...

Organism:: Homo sapiens

Type:: Methylation profiling by genome tiling array

Platform:: GPL13534
11 Samples

Download data: IDAT

Series

Accession:: GSE95036

ID:: 200095036

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20009881110.

RNA-seq and DNA methylation analysis in head and neck cancer cells and cell lines

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Homo sapiens

Type:: Expression profiling by high throughput sequencing; Methylation profiling by array

Platforms:: GPL13534 GPL18460
25 Samples

Download data

Series

Accession:: GSE98811

ID:: 200098811

Select item 20009880711.

DNA methylation analysis in head and neck cancer cells

(Submitter supplied) DNA methylation analysis in oropharyngeal squamous carcinoma(OPSCC) samples, oropharyngeal non-cancerous mucosa samples and head and neck cancer cell lines, FaDu and UMSCC47 before and after 5-aza'2-deoxycytidine(Aza)/trichostatin A(TSA) treatment. Infinium HumanMethylation450 BeadChip was used to obtain DNA methylation profiles across 485,577 CpG sites. Samples included 13 OPSCC samples, 4 non-cancerous mucosa samples and 2 FaDu with and without Aza/TSA treatment and 2 UMSCC47 with and without Aza/TSA treatment.

Organism:: Homo sapiens

Type:: Methylation profiling by array

Platform:: GPL13534
21 Samples

Download data: TXT

Series

Accession:: GSE98807

ID:: 200098807

Select item 20009880512.

RNA-seq of head and neck cancer cell lines

(Submitter supplied) Transcriptome analysis in head and neck cancer cell lines, FaDu and UMSCC47 with and without 5-aza'2-deoxycytidine(Aza)/trichostatin A(TSA) treatment.

Organism:: Homo sapiens

Type:: Expression profiling by high throughput sequencing

Platform:: GPL18460
4 Samples

Download data: TXT

Series

Accession:: GSE98805

ID:: 200098805

Select item 20008705313.

Genome wide DNA methylation in oral squamous cell carcinoma (OSCC) disease and adjacent normal tissue samples

(Submitter supplied) Genome wide DNA methylation profiling of normal and adjacent OSCC samples. The Illumina Infinium 450k Human DNA methylation Beadchip v1.2 was used to obtain DNA methylation profiles across approximately 4,50,000 CpGs in tissue samples. Total 21 samples were taken including 10 paired and 1 unpaired tissues. 6 were HPV Positive and 5 were HPV negative.

Organism:: Homo sapiens

Type:: Methylation profiling by genome tiling array

Platform:: GPL13534
21 Samples

Download data: IDAT

Series

Accession:: GSE87053

ID:: 200087053

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20003176714.

FOXM1 Orchestrates a Global Methylation Signature that Mimics the Cancer Epigenome

(Submitter supplied) Aberrant upregulation of a single oncogene FOXM1 in primary normal human oral epithelial cells orchestrated a cancer-like methylome landscape This study have identified a unique FOXM1-induced epigenetic signature which may have potentials as biomarkers for early oral cancer screening, diagnostic and/or therapeutic interventions

Organism:: Homo sapiens

Type:: Methylation profiling by genome tiling array

Platform:: GPL14361
3 Samples

Download data: GFF, PAIR, TXT

Series

Accession:: GSE31767

ID:: 200031767

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20005863015.

MeDIP-chip from head and neck squamous cell carcinoma tissues and normal subjects

(Submitter supplied) Profiling the genome-wide methylation status of head and neck squamous cell carcinoma and normal subjects

Organism:: Homo sapiens

Type:: Methylation profiling by genome tiling array

Platform:: GPL16062
6 Samples

Download data: PAIR

Series

Accession:: GSE58630

ID:: 200058630

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20002509316.

Global hypomethylation identifies loci targeted for hypermethylation in head and neck cancer

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Homo sapiens

Type:: Methylation profiling by array

Platform:: GPL8490
322 Samples

Download data

Series

Accession:: GSE25093

ID:: 200025093

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20002509117.

Global hypomethylation identifies loci targeted for hypermethylation in head and neck cancer: blood controls

(Submitter supplied) Genome-wide DNA methylation profiling of head and neck squamous cell carcinomas (HNSCCs). The Illumina Infinium 27k Human DNA methylation BeadChip v1.2 was used to obtain DNA methylation profiles across approximately 27,000 CpGs in fresh-frozen tumor tissues. Samples included 91 tumors from the oralpharynx and larynx, reflecting all stages of disease, 18 normal head and neck National Disease Research Interchange (NDRI) samples, and 213 normal control blood samples.

Organism:: Homo sapiens

Type:: Methylation profiling by array

Platform:: GPL8490
213 Samples

Download data: TXT

Series

Accession:: GSE25091

ID:: 200025091

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20002508918.

Global hypomethylation identifies loci targeted for hypermethylation in head and neck cancer: HNSCC

Organism:: Homo sapiens

Type:: Methylation profiling by array

Platform:: GPL8490
91 Samples

Download data: TXT

Series

Accession:: GSE25089

ID:: 200025089

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20002508319.

Global hypomethylation identifies loci targeted for hypermethylation in head and neck cancer: normal head and neck tissue

(Submitter supplied) Genome-wide DNA methylation profiling of head and neck squamous cell carcinomas. The Illumina Infinium 27k Human DNA methylation BeadChip v1.2 was used to obtain DNA methylation profiles across approximately 27,000 CpGs in fresh-frozen tumor tissues. Samples included 91 tumors from the oralpharynx and larynx, reflecting all stages of disease, 18 normal head and neck National Disease Research Interchange (NDRI) samples, and 213 normal control blood samples.

Organism:: Homo sapiens

Type:: Methylation profiling by array

Platform:: GPL8490
18 Samples

Download data: TXT

Series

Accession:: GSE25083

ID:: 200025083

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20003827020.

450k Analysis of 24 HNSCC cell lines

(Submitter supplied) The methylation analysis of HPV+ HNSCC cell lines and HPV- HNSCC cell lines as well as clones from an infected HPV- cell line by Infinium HumanMethylation450 BeadChip

Organism:: Homo sapiens

Type:: Methylation profiling by array

Platform:: GPL13534
24 Samples

Download data: CSV

Series

Accession:: GSE38270

ID:: 200038270

PubMed Full text in PMC Similar studies Analyze with GEO2R

GEO DataSets

Functional Genomics Studies

Result Filters

Entry type

Organism

Study type

Author

Attribute name

Publication dates

Custom date range

Additional filters

Send to:

Links from GEO DataSets

Items: 20

Send to:

Supplemental Content

Find related data

Important Links

Recent activity