GEO DataSets

(Submitter supplied) Harpegnathos workers were induced to transition to reproductive gamergates and 120 days later mRNA from their brains was sequenced to determine changes in gene expressioin

Organism:

Harpegnathos saltator

Type:

Expression profiling by high throughput sequencing

Platform:

GPL22089

47 Samples

Download data: TXT, XLSX

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Harpegnathos saltator

Type:

Expression profiling by high throughput sequencing; Other

Platforms:

GPL30014 GPL22089

28 Samples

Download data: FASTA, GTF

(Submitter supplied) RNA from brain and fat body/ovary (combined) was sequenced to use in Harpegnathos annotation improvement.

Organism:

Harpegnathos saltator

Type:

Other

Platform:

GPL30014

2 Samples

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(Submitter supplied) This RNA-seq was done separate from any annotation and used to calculate the % of reads mapping to features.

Organism:

Harpegnathos saltator

Type:

Expression profiling by high throughput sequencing

Platform:

GPL22089

26 Samples

Download data: TXT

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Harpegnathos saltator; Drosophila melanogaster

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL22089 GPL19132

49 Samples

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(Submitter supplied) We used 10x Genomics and Drop-seq single-cell RNA-seq to identify the cell type composition of the Harpegnathos brain and study how it changes during the process of adult caste transition (from worker to pseudo-queen), aging, and brain injury.

Organism:

Harpegnathos saltator

Type:

Expression profiling by high throughput sequencing

Platform:

GPL22089

42 Samples

Download data: TXT

(Submitter supplied) Transcriptome sequencing of Harpegnathos ovary, fat body, antenna, non-visual brain, optic lobe, and retina

Organism:

Harpegnathos saltator

Type:

Expression profiling by high throughput sequencing

Platform:

GPL22089

18 Samples

Download data: RPKM

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Harpegnathos saltator; Camponotus floridanus

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL22089 GPL20286

47 Samples

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(Submitter supplied) This experiment aimed at determining the immediate (d1) transcriptional consequences of knockding down the corazonin receptor in the ant brain.

Organism:

Harpegnathos saltator

Type:

Expression profiling by high throughput sequencing

Platform:

GPL22089

36 Samples

Download data: TXT

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Monomorium pharaonis; Camponotus floridanus; Harpegnathos saltator

Type:

Expression profiling by high throughput sequencing

4 related Platforms

152 Samples

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(Submitter supplied) This experiment aimed at determining the immediate (d1) transcriptional consequences of corazonin in the brain.

Organism:

Harpegnathos saltator

Type:

Expression profiling by high throughput sequencing

Platform:

GPL22089

23 Samples

Download data: TXT, XLSX

(Submitter supplied) Harpegnathos workers were induced to transition to reproductive gamergates and mRNA from their brains was sequenced to determine changes in gene expression at different time points (0, 6, 13, and 110 days after transition onset)

Organism:

Harpegnathos saltator

Type:

Expression profiling by high throughput sequencing

Platform:

GPL14138

20 Samples

Download data: TXT

(Submitter supplied) Replicate pools of heads from 10 individual Monomorium pharaonis workers, collected in the act of nursing larvae or foraging for food, each from a separate replicate colony

Organism:

Monomorium pharaonis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL22090

23 Samples

Download data: TXT

(Submitter supplied) RNA-seq from whole bodies of workers (major and minor) and queen from C. floridanus to increase replicate number from 2010 genome study

Organism:

Camponotus floridanus

Type:

Expression profiling by high throughput sequencing

Platform:

GPL14137

3 Samples

Download data: TXT

(Submitter supplied) Ant societies exhibit a division of labor in which a queen is in charge of reproduction while non-reproductive workers maintain the colony. In Harpegnathos saltator, workers retain reproductive ability, inhibited by the queen pheromones. Following the queen loss, the colony undergoes social unrest with an antenna dueling tournament. Most workers quickly abandon the tournament while a few workers continue the dueling for months and become gamergates (pseudoqueens). more...

Organism:

Harpegnathos saltator

Type:

Expression profiling by high throughput sequencing

Platform:

GPL29490

75 Samples

Download data: TXT

(Submitter supplied) We injected mature (4-months-old) workers and gamergates with siRNAs against Kr-h1 or, as a control, GFP and performed RNA-seq on their ovaries 24 h later

Organism:

Harpegnathos saltator

Type:

Expression profiling by high throughput sequencing

Platform:

GPL29395

22 Samples

Download data: TSV

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Harpegnathos saltator

Type:

Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing

Platforms:

GPL22089 GPL29395

157 Samples

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(Submitter supplied) We performed ChIP-seq with a new Kr-h1 antibody in the central brains of in established gamergates (day 120) and age-matched workers

Organism:

Harpegnathos saltator

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL29395

12 Samples

Download data: BED

(Submitter supplied) Central brain RNA-seq after control and Kr-h1 knockdown in d10 worker or gamergate.

Organism:

Harpegnathos saltator

Type:

Expression profiling by high throughput sequencing

Platform:

GPL29395

32 Samples

Download data: TSV

(Submitter supplied) We cultured primary Harpegnathos neurons in a medium containing 20E or JH3 and then switched the hormones. RNA-seq was performed 30 minutes, 6 hours, or 24 hours after the switch. To determine baseline expression in the cultures before the switch we also performed RNA-seq on the 6-day-old cultures 30 minues after addition of vehicle (DMSO).

Organism:

Harpegnathos saltator

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL29395 GPL22089

35 Samples

Download data: TSV