Similar studies for GEO DataSets (Select 200142061) - GEO DataSets

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Items: 10

Select item 2001420611.

Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and non-antibiotic pharmaceuticals stressed Acinetobacter baylyi ADP1 Transcriptomes

(Submitter supplied) The goals of this study are to use Next-generation sequencing (NGS) to detect bacterial mRNA profiles of wild-type A.baylyi ADP1, and its mRNA response under the exposure of six non-antibiotic pharmaceuticals, including ibuprofen, naproxen, gemfibrozil, diclofenac, propanolol, and iopromide. The concentrations were 0.5 mg/L for ibuprofen, naproxen, gemfibrozil, diclofenac, propanolol, and 1.0 mg/L for iopromide. more...

Organism:: Acinetobacter baylyi

Type:: Expression profiling by high throughput sequencing

Platform:: GPL27918
21 Samples

Download data: XLS

Series

Accession:: GSE142061

ID:: 200142061

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Select item 2001312292.

Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and non-antibiotic pharmaceuticals stressed E. coli K-12 LE392, P. putida KT2440, and RP4 plasmid Transcriptomes

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Plasmid RP4; Escherichia coli K-12; Pseudomonas putida KT2440

Type:: Expression profiling by high throughput sequencing

Platform:: GPL26609
30 Samples

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Series

Accession:: GSE131229

ID:: 200131229

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Select item 2001312283.

Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and non-antibiotic pharmaceuticals stressed E. coli K-12 LE392, P. putida KT2440, and RP4 plasmid Transcriptomes [experiment 2]

(Submitter supplied) The goals of this study are to use Next-generation sequencing (NGS) to detect bacterial mRNA profiles of E. coli K-12 LE392, P. putida KT2440 and IncPα RP4 plasmid, and their mRNA response under the exposure of CuO NPs and Cu2+. The concentrations were 5 μmol/L for CuO NPs and Cu2+. The group without dosing CuO NPs or Cu2+ was the control group. Each concentration was conducted in triplicate. By comparing the mRNA profiles of experimental groups and control group, the effects of these CuO NPs and Cu2+ on transcriptional levels can be revealed. more...

Organism:: Plasmid RP4; Escherichia coli K-12; Pseudomonas putida KT2440

Type:: Expression profiling by high throughput sequencing

Platform:: GPL26609
9 Samples

Download data: XLSX

Series

Accession:: GSE131228

ID:: 200131228

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Select item 2001305624.

(Submitter supplied) The goals of this study are to use Next-generation sequencing (NGS) to detect bacterial mRNA profiles of wild-type E. coli K-12 LE392, P. putida KT2440 and IncPα RP4 plasmid, and their mRNA response under the exposure of six non-antibiotic pharmaceuticals, including ibuprofen, naproxen, gemfibrozil, diclofenac, propanolol, and iopromide. The concentrations were 0.5 mg/L for ibuprofen, naproxen, gemfibrozil, diclofenac, propanolol, and 1.0 mg/L for iopromide. more...

Organism:: Plasmid RP4; Escherichia coli K-12; Pseudomonas putida KT2440

Type:: Expression profiling by high throughput sequencing

Platform:: GPL26609
21 Samples

Download data: XLSX

Series

Accession:: GSE130562

ID:: 200130562

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Select item 2001435545.

Next Generation Sequencing Facilitates Quantitative Analysis of E.coli DH5a Transcriptomes under triclosan exposure

(Submitter supplied) The goals of this study are to use Next-generation sequencing (NGS)to detect bacterial mRNA profiles of E.coli DH5a in response to 0, 20ug/L and 2 mg/L triclosan for 2 h, in triplicate, using Illumina HiSeq 2500.The NGS QC toolkit (version 2.3.3) was used to treat the raw sequence reads to trim the 3’-end residual adaptors and primers, and the ambiguous characters in the reads were removed. Then, the sequence reads consisting of at least 85% bases were progressively trimmed at the 3’-ends until a quality value ≥ 20 were kept. more...

Organism:: Escherichia coli

Type:: Expression profiling by high throughput sequencing

Platform:: GPL18133
9 Samples

Download data: XLS

Series

Accession:: GSE143554

ID:: 200143554

PubMed Similar studies SRA Run Selector

Select item 2001120646.

Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and carbamazepine-stressed E. coli K-12 LE392, P. putida KT2440, and RP4 plasmid Transcriptomes

(Submitter supplied) The goals of this study are to use Next-generation sequencing (NGS) to detect bacterial mRNA profiles of wild-type E. coli K-12 LE392, P. putida KT2440 and IncPα RP4 plasmid, and their mRNA response under the exposure of antiepileptic drug carbamazepine. Three concentrations of carbamazepine were applied, which were 0.05 mg/L, 10.0 mg/L and 50.0 mg/L (refer to low, medium and high, respectively). The group without dosing carbamazepine was the control group. more...

Organism:: Pseudomonas putida; Escherichia coli

Type:: Expression profiling by high throughput sequencing

Platform:: GPL24748
12 Samples

Download data: TXT

Series

Accession:: GSE112064

ID:: 200112064

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Select item 2001124517.

Next Generation Sequencing Facilitates Quantitative Analysis of E. coli K-12 LE392, P. putida KT2440, and RP4 plasmid Transcriptomes under triclosan exposure

(Submitter supplied) The goals of this study are to use Next-generation sequencing (NGS)to detect bacterial mRNA profiles of E. coli K-12 LE392, P. putida KT2440 and IncPα RP4 plasmid in response to 0, 0.02, 20 and 2000 μg/L triclosan for 2 h, in duplicate, using Illumina HiSeq 2500.The NGS QC toolkit (version 2.3.3) was used to treat the raw sequence reads to trim the 3’-end residual adaptors and primers, and the ambiguous characters in the reads were removed. more...

Organism:: Escherichia coli K-12

Type:: Expression profiling by high throughput sequencing

Platform:: GPL24570
8 Samples

Download data: XLSX

Series

Accession:: GSE112451

ID:: 200112451

PubMed Similar studies SRA Run Selector

Select item 2001819008.

Next Generation Sequencing Facilitates Quantitative Analysis of E. coli K-12 LE392, P. putida KT2440, and Acinetobacter baylyi ADP1 Transcriptomes under various antidepressant exposure

(Submitter supplied) The goals of this study are to use Next-generation sequencing (NGS)to detect bacterial mRNA profiles of E. coli K-12 LE392, P. putida KT2440 and Acinetobacter baylyi ADP1 in response to various antidepressant concentrations for 2 h, in triplicate, using Illumina HiSeq 2500.The NGS QC toolkit (version 2.3.3) was used to treat the raw sequence reads to trim the 3’-end residual adaptors and primers, and the ambiguous characters in the reads were removed. more...

Organism:: Escherichia coli; Acinetobacter baylyi; Pseudomonas putida

Type:: Expression profiling by high throughput sequencing

Platform:: GPL30502
24 Samples

Download data: XLS

Series

Accession:: GSE181900

ID:: 200181900

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Select item 2001282469.

Next Generation Sequencing Facilitates Quantitative Analysis of E. coli K-12 LE392, P. putida KT2440, and RP4 plasmid Transcriptomes under AgNP and silver ion exposure

(Submitter supplied) The goals of this study are to use Next-generation sequencing (NGS)to detect bacterial mRNA profiles of E. coli K-12 LE392, P. putida KT2440 and IncPα RP4 plasmid in response to 0 and 1 μg/L AgNPs or silver ion for 2 h, in duplicate, using Illumina HiSeq 2500.The NGS QC toolkit (version 2.3.3) was used to treat the raw sequence reads to trim the 3’-end residual adaptors and primers, and the ambiguous characters in the reads were removed. more...

Organism:: Pseudomonas putida KT2440; Escherichia coli K-12

Type:: Expression profiling by high throughput sequencing

Platform:: GPL26298
9 Samples

Download data: XLSX

Series

Accession:: GSE128246

ID:: 200128246

PubMed Similar studies SRA Run Selector

Select item 20014206210.

Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and disinfectants stressed Acinetobacter baylyi ADP1 Transcriptomes

(Submitter supplied) The goals of this study are to use Next-generation sequencing (NGS) to detect bacterial mRNA profiles of wild-type A.baylyi ADP1, and its mRNA response under the exposure of two disinfectants, chloramine and free chlorine. The concentrations 10 mg/L. The group without dosing disinfectants was the control group. Each concentration was conducted in triplicate. By comparing the mRNA profiles of experimental groups and control group, the effects of these two disinfectants on transcriptional levels can be revealed. more...