Similar studies for GEO DataSets (Select 200160034) - GEO DataSets

Select item 2001600341.

A Multiplexed, Next-Generation Sequencing Platform for High-Throughput Detection of SARS-CoV-2 [extended cohort]

(Submitter supplied) Population scale sweeps of viral pathogens, such as SARS-CoV-2, require high intensity testing for effective management. However, reliable systems affording parallel testing of thousands of patients for pathogen infection have not yet been routinely employed. Here we describe “Systematic Parallel Analysis of RNA coupled to Sequencing for Covid-19 screening” (C19-SPAR-Seq), a multiplexed, readily automated platform for SARS-CoV-2 detection capable of analyzing tens of thousands of patient samples in a single instrument run. more...

Organism:: synthetic construct; synthetic RNA; Homo sapiens

Type:: Other

Platforms:: GPL29299 GPL27609 GPL21697
1702 Samples

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Series

Accession:: GSE160034

ID:: 200160034

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Select item 2001600362.

A Multiplexed, Next-Generation Sequencing Platform for High-Throughput Detection of SARS-CoV-2

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: synthetic RNA; synthetic construct; Homo sapiens

Type:: Other

6 related Platforms
2932 Samples

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Series

Accession:: GSE160036

ID:: 200160036

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Select item 2001600333.

A Multiplexed, Next-Generation Sequencing Platform for High-Throughput Detection of SARS-CoV-2 [pilot cohort]

(Submitter supplied) Population scale sweeps of viral pathogens, such as SARS-CoV-2, require high intensity testing for effective management. However, reliable systems affording parallel testing of thousands of patients for pathogen infection have not yet been routinely employed. Here we describe “Systematic Parallel Analysis of RNA coupled to Sequencing for Covid-19 screening” (C19-SPAR-Seq), a multiplexed, readily automated platform for SARS-CoV-2 detection capable of analyzing tens of thousands of patient samples in a single instrument run. more...

Organism:: synthetic RNA; Homo sapiens; synthetic construct

Type:: Other

Platforms:: GPL21697 GPL29299 GPL27609
862 Samples

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Series

Accession:: GSE160033

ID:: 200160033

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Select item 2001600324.

A Multiplexed, Next-Generation Sequencing Platform for High-Throughput Detection of SARS-CoV-2 [test cohort]

(Submitter supplied) Population scale sweeps of viral pathogens, such as SARS-CoV-2, require high intensity testing for effective management. However, reliable systems affording parallel testing of thousands of patients for pathogen infection have not yet been routinely employed. Here we describe “Systematic Parallel Analysis of RNA coupled to Sequencing for Covid-19 screening” (C19-SPAR-Seq), a multiplexed, readily automated platform for SARS-CoV-2 detection capable of analyzing tens of thousands of patient samples in a single instrument run. more...

Organism:: synthetic construct; synthetic RNA; Homo sapiens

Type:: Other

Platforms:: GPL17769 GPL27028 GPL15520
316 Samples

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Series

Accession:: GSE160032

ID:: 200160032

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Select item 2001600315.

A Multiplexed, Next-Generation Sequencing Platform for High-Throughput Detection of SARS-CoV-2 [PoC cohort]

(Submitter supplied) Population scale sweeps of viral pathogens, such as SARS-CoV-2, require high intensity testing for effective management. However, reliable systems affording parallel testing of thousands of patients for pathogen infection have not yet been routinely employed. Here we describe “Systematic Parallel Analysis of RNA coupled to Sequencing for Covid-19 screening” (C19-SPAR-Seq), a multiplexed, readily automated platform for SARS-CoV-2 detection capable of analyzing tens of thousands of patient samples in a single instrument run. more...

Organism:: Homo sapiens; synthetic RNA

Type:: Other

Platforms:: GPL27028 GPL15520
52 Samples

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Series

Accession:: GSE160031

ID:: 200160031

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Select item 2001636886.

SARSeq, a robust and highly multiplexed NGS assay for parallel detection of SRAS-CoV2 and other respiratory infections

(Submitter supplied) During a pandemic, mitigation as well as protection of system-critical or vulnerable institutions requires massively parallel, yet cost-effective testing to monitor the spread of agents such as the current SARS-CoV2 virus. Here we present SARSeq, saliva analysis by RNA sequencing, as an approach to monitor presence of SARS-CoV2 and other respiratory viruses performed on tens of thousands of samples in parallel. more...

Organism:: Homo sapiens

Type:: Other

Platforms:: GPL21697 GPL15520
10 Samples

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Series

Accession:: GSE163688

ID:: 200163688

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Select item 2001730867.

Developing RT-LAMP Assays for Detection of SARS-CoV-2 in Saliva

(Submitter supplied) Reverse transcription loop-mediated isothermal amplification (RT-LAMP) is a fast and convenient method to amplify and identify the transcripts of a targeted pathogen. We combined bioinformatic and experimental analyses to improve the RT-LAMP assay performance for COVID-19 diagnosis. First, we developed an improved algorithm to design LAMP primers targeting the nucleocapsid (N), membrane (M), and spike (S) genes of SARS-CoV-2. more...