Similar studies for GEO DataSets (Select 200247924) - GEO DataSets

Links from GEO DataSets

Items: 20

Select item 2002479241.

Factors governing the transcriptome changes and chronological lifespan of fission yeast during phosphate starvation II

(Submitter supplied) This RNA-Seq analysis compares gene expression of the wild-type fission yeast (Schizosaccharomyces pombe) strain at various times after transfer to defined phosphate-replete ePMGT(+PO4) medium (2, 4, 8 HR) contrasting to the WT fission yeast S. pombe cells grown in phosphate-replete YES medium (0HR).

Organism:: Schizosaccharomyces pombe

Type:: Expression profiling by high throughput sequencing

Platform:: GPL28961
12 Samples

Download data: XLSX

Series

Accession:: GSE247924

ID:: 200247924

PubMed Full text in PMC Similar studies

Select item 2002479222.

Factors governing the transcriptome changes and chronological lifespan of fission yeast during phosphate starvation I

(Submitter supplied) RNA-seq analysis compares gene expression of the fission yeast (Schizossacharomyces pombe) ecl123∆ mutant at various times after phosphate starvation (4, 8, 12, 24, 36 and 48h) to the ecl123∆ mutant fission yeast strain grown in phosphate replete conditions (0h, prior to phosphate starvation).

Organism:: Schizosaccharomyces pombe

Type:: Expression profiling by high throughput sequencing

Platform:: GPL28961
21 Samples

Download data: XLSX

Series

Accession:: GSE247922

ID:: 200247922

PubMed Full text in PMC Similar studies

Select item 2002478023.

Factors governing the transcriptome changes and chronological lifespan of fission yeast during phosphate starvation

(Submitter supplied) RNA-seq analysis compares gene expression of the ecl3∆ and ecl123∆ mutants to the wild-type fission yeast (Schizosaccharomyces pombe).

Organism:: Schizosaccharomyces pombe

Type:: Expression profiling by high throughput sequencing

Platform:: GPL28961
9 Samples

Download data: XLSX

Series

Accession:: GSE247802

ID:: 200247802

PubMed Full text in PMC Similar studies

Select item 2002477994.

Factors governing the transcriptome changes and chronological lifespan of fission yeast during phosphate starvation

(Submitter supplied) This RNA-Seq analysis compares gene expression of the pho7∆ fission yeast (Schizosaccharomyces pombe) strain prior to phosphate starvation (0 HR), i.e. in phosphate replete conditions, and at various times after phosphate starvation (4, 8, 12, 24, 36, and 48 HR) contrasting to the WT fission yeast S. pombe cells grown in phosphate replete conditions (WT 0HR)

Organism:: Schizosaccharomyces pombe

Type:: Expression profiling by high throughput sequencing

Platform:: GPL28961
24 Samples

Download data: XLSX

Series

Accession:: GSE247799

ID:: 200247799

PubMed Full text in PMC Similar studies

Select item 2000394995.

Genome-Wide Characterization of the Phosphate Starvation Response in Schizosaccharomyces pombe

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Schizosaccharomyces pombe; Schizosaccharomyces pombe 972h-

Type:: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by array

Platforms:: GPL15830 GPL15827
47 Samples

Download data: GPR, WIG

Series

Accession:: GSE39499

ID:: 200039499

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000394986.

Genome-Wide Characterization of the Phosphate Starvation Response in Schizosaccharomyces pombe [ChIP-Seq data]

(Submitter supplied) Inorganic phosphate is an essential nutrient required by organisms for growth. During phosphate starvation, Saccharomyces cerevisiae activates the phosphate signal transduction (PHO) pathway leading to the expression of the secreted acid phosphatase, PHO5. The fission yeast, Schizosaccharomyces pombe, regulates expression of the ScPHO5 homolog (pho1+) via a non-orthologous PHO pathway. The genes induced by phosphate limitation and the molecular mechanism by which the genetically identified positive (pho7+) and negative (csk1+) regulators function are not known. more...

Organism:: Schizosaccharomyces pombe 972h-

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL15830
5 Samples

Download data: WIG

Series

Accession:: GSE39498

ID:: 200039498

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000394787.

Genome-Wide Characterization of the Phosphate Starvation Response in Schizosaccharomyces pombe [gene expression data]

Organism:: Schizosaccharomyces pombe; Schizosaccharomyces pombe 972h-

Type:: Expression profiling by array

Platform:: GPL15827
42 Samples

Download data: GPR

Series

Accession:: GSE39478

ID:: 200039478

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2002451388.

Suppression of inositol pyrophosphate toxicosis and hyper-repression of the fission yeast PHO regulon by loss-of-function mutations in chromatin remodelers Snf22 and Sol1

(Submitter supplied) RNA-seq analysis compares gene expression of the snf22∆ and snf22-(D996A-E997A) mutants to the wild-type fission yeast (Schizosaccharomyces pombe).

Organism:: Schizosaccharomyces pombe

Type:: Expression profiling by high throughput sequencing

Platform:: GPL28961
9 Samples

Download data: XLSX

Series

Accession:: GSE245138

ID:: 200245138

PubMed Full text in PMC Similar studies

Select item 2002179539.

Cellular responses to long-term phosphate starvation of fission yeast: Maf1 determines fate choice between quiescence and death associated with aberrant tRNA biogenesis

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Schizosaccharomyces pombe

Type:: Expression profiling by high throughput sequencing

Platform:: GPL28961
35 Samples

Download data: XLSX

Series

Accession:: GSE217953

ID:: 200217953

PubMed Full text in PMC Similar studies

Select item 20021795210.

Cellular responses to long-term phosphate starvation of fission yeast: Maf1 determines fate choice between quiescence and death associated with aberrant tRNA biogenesis (CHX experiments)

(Submitter supplied) This RNA-Seq analysis compares gene expression of fission yeast cells (Schizosaccharomyces pombe) at various times after phosphate starvation (2, 4, and 8 HR) either with 100 µg/ml cycloheximide or without drug contrasting to the cells grown in phosphate replete conditions (0HR) in the absence of the drug.

Organism:: Schizosaccharomyces pombe

Type:: Expression profiling by high throughput sequencing

Platform:: GPL28961
21 Samples

Download data: XLSX

Series

Accession:: GSE217952

ID:: 200217952

PubMed Full text in PMC Similar studies

Select item 20021345911.

Cellular responses to long-term phosphate starvation of fission yeast: Maf1 determines fate choice between quiescence and death associated with aberrant tRNA biogenesis

(Submitter supplied) This RNA-Seq analysis compares gene expression of fission yeast (Schizosaccharomyces pombe) strains prior to phosphate starvation (0 HR) and at various times after phosphate starvation (4, 8, 12, 24, 36, and 48 HR) contrasting to the WT fission yeast S. pombe cells grown in phosphate replete conditions (WT 0HR)

Organism:: Schizosaccharomyces pombe

Type:: Expression profiling by high throughput sequencing

Platform:: GPL28961
14 Samples

Download data: TXT, XLSX

Series

Accession:: GSE213459

ID:: 200213459

PubMed Full text in PMC Similar studies

Select item 20006712612.

A new phosphate-starvation response in fission yeast requires the endocytic function of myosin I

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Schizosaccharomyces pombe

Type:: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing

Platforms:: GPL17225 GPL16192
34 Samples

Download data

Series

Accession:: GSE67126

ID:: 200067126

PubMed Full text in PMC Similar studies

Select item 20006710513.

A novel phosphate-starvation response in fission yeast requires the endocytic function of Myosin I (ChIP-seq)

(Submitter supplied) S. pombe Myosin I (MyoI) plays a key role in cytoskeletal functions, in particular it is part of the endocytotic machinery. Here we show a novel role for MyoI in regulating the response to low phosphate stress. Deletion of MyoI led to an increased proliferation in low phosphate media when compared to a control strain; mutations in other proteins involved in the early steps of endocytosis, such as ARP2 and Sla2/END4, led to the same phenotype. more...

Organism:: Schizosaccharomyces pombe

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platforms:: GPL17225 GPL16192
10 Samples

Download data: TXT

Series

Accession:: GSE67105

ID:: 200067105

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20006557914.

A novel phosphate-starvation response in fission yeast requires the endocytic function of Myosin I (RNA-seq)

Organism:: Schizosaccharomyces pombe

Type:: Expression profiling by high throughput sequencing

Platform:: GPL17225
24 Samples

Download data: TXT

Series

Accession:: GSE65579

ID:: 200065579

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20007776115.

Conserved and diverged functions of the calcineurin-activated Prz1 transcription factor in fission yeast

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Schizosaccharomyces pombe

Type:: Expression profiling by array; Genome binding/occupancy profiling by genome tiling array

Platforms:: GPL16235 GPL16187
18 Samples

Download data: GPR

Series

Accession:: GSE77761

ID:: 200077761

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20007776016.

Genome-wide analysis of Prz1 in fission yeast reveals a novel inhibitory role in flocculation and a conserved activating role in cell wall organization [ChIP-chip]

(Submitter supplied) Gene regulation in response to intracellular calcium is mediated by the calcineurin-activated transcription factor Prz1 in the fission yeast Schizosaccharomyces pombe. Genome-wide studies of the Crz1 and CrzA fungal orthologs have uncovered numerous target genes involved in conserved and species-specific cellular processes. In contrast, very few target genes of Prz1 have been published. This paper identified an extensive list of genes using transcriptome and ChIP-chip analyses under inducing conditions of Prz1, including CaCl2, and tunicamycin treatment, as well as a ∆pmr1 genetic background. more...

Organism:: Schizosaccharomyces pombe

Type:: Genome binding/occupancy profiling by genome tiling array

Platform:: GPL16235
4 Samples

Download data: GPR

Series

Accession:: GSE77760

ID:: 200077760

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20007775917.

Genome-wide analysis of Prz1 in fission yeast reveals a novel inhibitory role in flocculation and a conserved activating role in cell wall organization [expression]

Organism:: Schizosaccharomyces pombe

Type:: Expression profiling by array

Platform:: GPL16187
14 Samples

Download data: GPR

Series

Accession:: GSE77759

ID:: 200077759

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20014409218.

Genetic interactions and transcriptomics implicate fission yeast CTD prolyl isomerase Pin1 as an agent of RNA 3' processing and transcription termination that functions via its effects on CTD phosphatase Ssu72

(Submitter supplied) This RNA-Seq analysis compares gene expression of the peptidyl-prolyl isomerase Pin1 mutant pin1∆ contrasting to the WT in the fission yeast S. pombe

Organism:: Schizosaccharomyces pombe

Type:: Expression profiling by high throughput sequencing

Platform:: GPL22682
3 Samples

Download data: TXT

Series

Accession:: GSE144092

ID:: 200144092

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20013123719.

Inositol pyrophosphate dynamics impact fission yeast phosphate homeostasis via modulation of RNA 3' processing and transcription termination

(Submitter supplied) This RNA-Seq analysis compares gene expression of the Inositol pyrophosphate phosphatase mutant aps1∆ and Inositol pyrophsophate kinase mutant asp1-D333A contrasting to the WT in the fission yeast S. pombe

Organism:: Schizosaccharomyces pombe

Type:: Expression profiling by high throughput sequencing

Platform:: GPL22682
9 Samples

Download data: TXT, XLSX

Series

Accession:: GSE131237

ID:: 200131237

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20012755020.

Inositol pyrophosphate dynamics impact phosphate homeostasis via modulation of RNA 3' processing and transcription termination

(Submitter supplied) Fission yeast phosphate acquisition genes pho1, pho84, and tgp1 are repressed in phosphate-rich medium by transcription of upstream lncRNAs. Here we show phosphate homeostasis is subject to metabolite control by inositol pyrophosphates (IPPs), exerted through the 3'-processing/termination machinery and the Pol2 CTD code. Increasing IP8 (via Asp1 IPP pyrophosphatase mutation) de-represses the PHO regulon and leads to precocious termination of prt lncRNA synthesis. more...

Organism:: Schizosaccharomyces pombe

Type:: Expression profiling by high throughput sequencing

Platform:: GPL22682
12 Samples

Download data: TXT, XLSX

Series

Accession:: GSE127550

ID:: 200127550

PubMed Full text in PMC Similar studies SRA Run Selector

GEO DataSets

Functional Genomics Studies

Result Filters

Entry type

Organism

Study type

Author

Attribute name

Publication dates

Custom date range

Additional filters

Send to:

Links from GEO DataSets

Items: 20

Send to:

Supplemental Content

Find related data

Important Links

Recent activity