GEO DataSets

(Submitter supplied) Ethylene glycol (EG) is a widely used industrial chemical with manifold applications and is also generated in the degradation of plastics such as PET. Rhodococcus jostii RHA1 (RHA1), a potential biocatalytic chassis, grows on EG. Transcriptomic analyses revealed four clusters of genes potentially involved in EG catabolism: the mad locus, predicted to encode mycofactocin-dependent alcohol degradation, including the catabolism of EG to glycolate; two GCL clusters, predicted to encode glycolate and glyoxylate catabolism; and the mft genes, predicted to specify mycofactocin biosynthesis. more...

Organism:

Rhodococcus jostii

Type:

Expression profiling by high throughput sequencing

Platform:

GPL34291

12 Samples

Download data: TSV

(Submitter supplied) Two cultures, one grown on cholic acid and the other on pyruvate.

Organism:

Rhodococcus jostii RHA1

Type:

Expression profiling by array

Platform:

GPL3918

3 Samples

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(Submitter supplied) p-Hydroxycinnamates, such as p-coumarate and ferulate, are components of plant cell walls and have a number of commercial applications. Previously, we had shown that the soil Actinobacterium Rhodococcus jostii RHA1 (RHA1) grows on ferulate, catabolizing it via vanillate and the β-ketoadipate pathway. We used transcriptomics to identify genes in RHA1 that were specifically up-regulated during growth on ferulate. more...

Organism:

Rhodococcus jostii

Type:

Expression profiling by high throughput sequencing

Platform:

GPL18502

2 Samples

Download data: TXT

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Rhodococcus jostii RHA1

Type:

Expression profiling by array

Platform:

GPL3918

9 Samples

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(Submitter supplied) two cultures one grown on cholesterol and other on pyruvate Keywords: growth type

Organism:

Rhodococcus jostii RHA1

Type:

Expression profiling by array

Platform:

GPL3918

3 Samples

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(Submitter supplied) Analysis of gene expression in Pseudonocardia dioxanivorans strain CB1190 during growth with dioxane, glycolate or pyruvate.

Organism:

Pseudonocardia dioxanivorans CB1190

Type:

Expression profiling by array

Platform:

GPL14784

9 Samples

Download data: CEL

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Rhodococcus jostii RHA1

Type:

Expression profiling by array

Dataset:

GDS2683

Platform:

GPL3918

6 Samples

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Analysis of Rhodococcus sp. strain RHA1 cells exposed to the pollutant phthalate (PTH) or terephthalate (TPA). Phthalate esters are used as plastic additives. RHA1 is able to degrade a wide range of aromatic compounds including PTH. Results provide insight into the ability of RHA1 to degrade TPA.

Organism:

Rhodococcus jostii RHA1

Type:

Expression profiling by array, log2 ratio, 2 agent sets

Platform:

GPL3918

Series:

GSE6685

6 Samples

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(Submitter supplied) Oleaginous microorganisms have considerable potential for biofuel and commodity chemical production. Under nitrogen-limitation, Rhodococcus jostii RHA1 grown on benzoate, an analog of lignin depolymerization products, accumulated triacylglycerols (TAGs) to 55% of its dry weight during transition to stationary phase, with the predominant fatty acids being C16:0 and C17:0. Transcriptomic analyses of RHA1 grown under conditions of N-limitation and N-excess revealed 1,826 dysregulated genes. more...

Organism:

Rhodococcus jostii

Type:

Expression profiling by high throughput sequencing

Platform:

GPL21367

8 Samples

Download data: TXT

(Submitter supplied) Here we report the first transcriptomic analysis of a Gram-positive bacterium to desiccation. Filtered RHA1 cells incubated at either low relative humidity (20%), as an air drying treatment, or high relative humidity (100%), as a control, were transcriptionally profiled over a comprehensive time series. Keywords: stress response time course

Organism:

Rhodococcus jostii RHA1

Type:

Expression profiling by array

Platforms:

GPL6703 GPL3918

42 Samples

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