GEO DataSet Links for PMC (Select 3584546) - GEO DataSets

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Items: 3

Select item 2000413781.

Genome-wide identification of mis-spliced/intron-retained transcripts in Arabidopsis thaliana rcf1-1 mutant plants under cold stress as determined by tiling array analysis.

(Submitter supplied) Cold stress is one of the most severe environmental conditions which cause huge losses in crop production worldwide. We identified a DEAD box RNA helicase, RCF1 (Regulator of CBF gene expression 1) that controls pre-mRNA splicing of cold-stress-responsive genes including positive and negative regulators of CBF genes. We used whole genome tiling array analysis under cold stress to identify transcripts which are mis-spliced/intron-retained in rcf1-1.

Organism:: Arabidopsis thaliana

Type:: Expression profiling by genome tiling array

Platform:: GPL10977
6 Samples

Download data: CEL, TXT

Series

Accession:: GSE41378

ID:: 200041378

PubMed Full text in PMC Similar studies

Select item 2000413772.

Genome-wide identification of mis-spliced/intron-retained transcripts in Arabidopsis thaliana rcf1-1 mutant plants under normal growth conditions as determined by tiling array analysis.

(Submitter supplied) Cold stress is one of the most severe environmental conditions which cause huge losses in crop production worldwide. We identified a DEAD box RNA helicase, RCF1 (Regulator of CBF gene expression 1) that controls pre-mRNA splicing of cold-stress-responsive genes including positive and negative regulators of CBF genes. We used whole genome tiling array analysis under normal growth conditions to identify transcripts which are mis-spliced/intron-retained in rcf1-1.

Organism:: Arabidopsis thaliana

Type:: Expression profiling by genome tiling array

Platform:: GPL10977
6 Samples

Download data: CEL, TXT

Series

Accession:: GSE41377

ID:: 200041377

PubMed Full text in PMC Similar studies

Select item 2000390903.

The rcf1-1 mutation affects global gene expression in Arabidopsis thaliana with or without cold stress.

(Submitter supplied) Cold stress is one of the most severe environmental conditions which cause huge losses in crop production worldwide. We identified an essential regulator of cold-responsive genes and used the Affymetrix whole-genome arrays to define downstream targets of this important protein. We used the microarrays to reveal the effect of rcf1-1 mutation on global gene expression with or without cold stress at 4°C. more...