GEO DataSets

(Submitter supplied) These data belong to a metabolic engineering project that introduces the reductive glycine pathway for formate assimilation in Cupriavidus necator. As part of this project we performed short-term evolution of the bacterium Cupriavidus necator H16 to grow on glycine as sole carbon and energy source. Some mutations in a putiative glycine transporting systems facilitated growth, and we performed transcriptomics on the evolved strain growing on glycine. more...

Organism:

Cupriavidus necator

Type:

Expression profiling by high throughput sequencing

Platform:

GPL27909

3 Samples

Download data: TAB

(Submitter supplied) We investigate photorespiration pathways in the chemoautotroph Cupriavidus necator H16 when growing autotropically on hydrogen and carbon dioxide via the Calvin Cycle. We demonstrate an upregulation of the glycerate pathway under photorespiration (ambient carbon dioxide) conditions

Organism:

Cupriavidus necator

Type:

Expression profiling by high throughput sequencing

Platform:

GPL27909

6 Samples

Download data: TAB

(Submitter supplied) Ralstonia eutropha H16 is well-known to produce poly(3-hydroxybutyrate) [P(3HB)], a kind of polyhydroxyalkanoates attracted as bio-based biodegradable plastics, efficiently as an energy storage material under unbalanced growth conditions. To obtain further extended knowledge of PHA biosynthesis, this study employed quantitative transcriptome analysis based on deep sequencing of complementary DNA generated from RNA (RNA-seq) for R. more...

Organism:

Cupriavidus necator H16

Type:

Expression profiling by high throughput sequencing

Platform:

GPL17263

3 Samples

Download data: TXT

(Submitter supplied) Whole genome gene expression analysis was examined with Ralstonia eutropha strain H16 cultures grown in PHB production medium (recipe per Peoples and Sinskey, 1989) containing fructose or trioleate as the main carbon source. The goal of this analysis was to determine the identity of the triacylglycerol and fatty acid breakdown genes in R. eutropha strain H16.

Organism:

Cupriavidus necator; Cupriavidus necator H16

Type:

Expression profiling by array

Platform:

GPL10276

15 Samples

Download data: CEL

(Submitter supplied) http://www.affymetrix.com/products_services/arrays/specific/cexpress.affx

Organism:

Cupriavidus necator

1 Series

15 Samples

Download data: CDF, TXT